Reference health
Reconstructing the ancestor of <i>Mycobacterium leprae</i>: The dynamics of gene loss and genome reduction
38/38 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
1 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 38 checked references that resolve
resolves10.1093/molbev/msi134
Genome Rearrangement Distances and Gene Order Phylogeny in γ-Proteobacteria
resolves10.1093/aob/mci010
Economy, Speed and Size Matter: Evolutionary Forces Driving Nuclear Genome Miniaturization and Expansion
resolves10.1038/31159
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence
resolves10.1111/j.1365-2958.2006.05046.x
Replication‐associated gene dosage effects shape the genomes of fast‐growing bacteria but only for transcription and translation genes
resolves10.1093/molbev/msj036
The “Domino Theory” of Gene Death: Gradual and Mass Gene Extinction Events in Three Lineages of Obligate Symbiotic Bacterial Pathogens
resolves10.1101/gr.3771305
Genome sequence of <i>Blochmannia pennsylvanicus</i> indicates parallel evolutionary trends among bacterial mutualists of insects
resolves10.1186/1471-2148-6-56
resolves10.1128/JB.184.19.5479-5490.2002
Whole-Genome Comparison of<i>Mycobacterium tuberculosis</i>Clinical and Laboratory Strains
resolves10.1073/pnas.1533499100
The genome sequence of
<i>Blochmannia floridanus</i>
: Comparative analysis of reduced genomes
resolves10.1093/molbev/msh232
The Evolutionary Fate of Nonfunctional DNA in the Bacterial Endosymbiont Buchnera aphidicola
resolves10.1007/BF02103423
Deletions in processed pseudogenes accumulate faster in rodents than in humans
resolves10.1080/10635150390235520
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
resolves10.1093/bib/5.2.150
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
resolves10.1073/pnas.0505662102
The complete genome sequence of
<i>Mycobacterium avium</i>
subspecies
<i>paratuberculosis</i>
resolves10.1186/gb-2004-5-9-r64
Comprehensive analysis of pseudogenes in prokaryotes: widespread gene decay and failure of putative horizontally transferred genes
resolves10.1016/S0966-842X(02)00031-8
Did the loss of sigma factors initiate pseudogene accumulation in M. leprae?
resolves10.1111/j.1574-6976.2006.00041.x
Comparative genomics of metabolic pathways in<i>Mycobacterium</i>species: gene duplication, gene decay and lateral gene transfer
resolves10.1007/s00248-002-0012-9
Estimating Population Size and Transmission Bottlenecks in Maternally Transmitted Endosymbiotic Bacteria
resolves10.1186/gb-2001-2-12-research0054
The process of genome shrinkage in the obligate symbiont Buchnera aphidicola
resolves10.1007/BF02111283
Evolution in bacteria: Evidence for a universal substitution rate in cellular genomes
resolves10.1038/ng1227
Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica
resolves10.1093/molbev/msj052
Inference and Analysis of the Relative Stability of Bacterial Chromosomes
resolves10.1016/S0168-9525(01)02483-0
Genome size reduction through multiple events of gene disintegration in Buchnera APS
resolves10.1007/978-3-540-35306-5_7
Genomic Changes in Bacteria: From Free-Living to Endosymbiotic Life
resolves10.1093/nar/25.24.4876
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
resolves10.1093/oxfordjournals.molbev.a026236
Estimating Synonymous and Nonsynonymous Substitution Rates Under Realistic Evolutionary Models
The 1 reference without a DOI — listed, not checked
no DOI — not checkedErickson, B.W. Sellers, P.H. (1983) in Time warps, string edits, and macromolecules: The theory and practice of sequence comparison, Recognition of patterns in genetic sequences, eds Sankoff, D. Kruskal, J.B. (Addison-Wesley, Boston, MA), pp 55–91.
What this badge says. CiteStamped means the CHECKABLE references of this
work were clean at the dated check: each resolved to a known work in a public registry, and none
carried a retraction notice at that time. It says nothing about the quality, findings,
or importance of the work itself, and nothing about references deposited without a DOI.
checked 2026-07-22 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record
Embed this badge
Both snippets point at the live badge image and link back to this page. The badge re-renders from the daily check, so an embed never goes stale by more than a day of visits.
<a href="https://citestamp.com/citestamped/10.1101/gr.6360207"><img src="https://citestamp.com/citestamped/10.1101/gr.6360207/badge.svg" alt="CiteStamped reference-health badge" width="460" height="64"></a>
[](https://citestamp.com/citestamped/10.1101/gr.6360207)