Reference health
The anatomy of microbial cell state transitions in response to oxygen
1 of 67 checkable references need attention · checked 2026-09-03
At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.
2 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
References needing attention
does not resolve to a known work10.1038/4100069
The 66 checked references that resolve
resolves10.1073/pnas.192558999
Coordinate regulation of energy transduction modules in
<i>Halobacterium</i>
sp. analyzed by a global systems approach
resolves10.1101/gr.1993504
Systems Level Insights Into the Stress Response to UV Radiation in the Halophilic Archaeon
<i>Halobacterium NRC-1</i>
resolves10.1073/pnas.112318199
Global analysis of mRNA decay and abundance in
<i>Escherichia coli</i>
at single-gene resolution using two-color fluorescent DNA microarrays
resolves10.1074/mcp.M400099-MCP200
Post-transcriptional Expression Regulation in the Yeast Saccharomyces cerevisiae on a Genomic Scale
resolves10.1186/gb-2004-5-8-r52
Comprehensive de novo structure prediction in a systems-biology context for the archaea Halobacterium sp. NRC-1
resolves10.1186/gb-2006-7-5-r36
The Inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo
resolves10.1128/AAC.48.7.2659-2664.2004
Oxygen Limitation Contributes to Antibiotic Tolerance of
<i>Pseudomonas aeruginosa</i>
in Biofilms
resolves10.1093/aob/mci217
Genome-wide Analysis of Transcript Abundance and Translation in Arabidopsis Seedlings Subjected to Oxygen Deprivation
resolves10.1073/pnas.0609508103
Conservation of the metabolomic response to starvation across two divergent microbes
resolves10.1371/journal.pcbi.0030057
Posttranscriptional Expression Regulation: What Determines Translation Rates?
resolves10.1038/msb4100151
Integrated proteomic and transcriptomic profiling of mouse lung development and Nmyc target genes
resolves10.1128/jb.152.2.584-594.1982
Different control circuits for growth rate-dependent regulation of 6-phosphogluconate dehydrogenase and protein components of the translational machinery in Escherichia coli
resolves10.1111/j.1365-2958.1993.tb01698.x
Retarded RNA turnover in <i>Escherichia coli:</i> a means of maintaining gene expression during anaerobiosis
resolves10.1074/mcp.M200001-MCP200
Complementary Profiling of Gene Expression at the Transcriptome and Proteome Levels in Saccharomyces cerevisiae
resolves10.1073/pnas.91.12.5475
The bat gene of Halobacterium halobium encodes a trans-acting oxygen inducibility factor.
resolves10.1007/s00438-003-0883-6
Genome-wide survey of mRNA half-lives in Bacillus subtilis identifies extremely stable mRNAs
resolves10.1073/pnas.93.18.9493
Unifying theory of hypoxia tolerance: molecular/metabolic defense and rescue mechanisms for surviving oxygen lack.
resolves10.1089/10665270050514945
Testing for Differentially-Expressed Genes by Maximum-Likelihood Analysis of Microarray Data
resolves10.1126/science.292.5518.929
Integrated Genomic and Proteomic Analyses of a Systematically Perturbed Metabolic Network
resolves10.1016/S0065-2911(02)46003-1
How oxygen damages microbes: Oxygen tolerance and obligate anaerobiosis
resolves10.1101/gr.5189606
A systems view of haloarchaeal strategies to withstand stress from transition metals
resolves10.1038/msb4100024
A uniform proteomics MS/MS analysis platform utilizing open XML file formats
resolves10.1099/00221287-144-3-739
Stationary phase, amino acid limitation and recovery from stationary phase modulate the stability and translation of chloramphenicol acetyltransferase mRNA and total mRNA in Escherichia coli
resolves10.1073/pnas.172170199
Global analysis of the
<i>Deinococcus radiodurans</i>
proteome by using accurate mass tags
resolves10.1186/1471-2105-7-286
SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology
resolves10.1002/pmic.200400994
Large‐scale evaluation of quantitative reproducibility and proteome coverage using acid cleavable isotope coded affinity tag mass spectrometry for proteomic profiling
resolves10.1093/bioinformatics/18.2.329
ISEApeaks: an Excel platform for GeneScan and Immunoscope data
retrieval, management and analysis
resolves10.1128/JB.187.5.1659-1667.2005
Genomic Analysis of Anaerobic Respiration in the Archaeon<i>Halobacterium</i>sp. Strain NRC-1: Dimethyl Sulfoxide and Trimethylamine<i>N</i>-Oxide as Terminal Electron Acceptors
resolves10.1146/annurev.micro.52.1.165
ANAEROBIC GROWTH OF A “STRICT AEROBE” (<i>BACILLUS SUBTILIS</i>)
resolves10.1038/nature04785
Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
resolves10.1111/j.1365-2958.1994.tb01000.x
The concentrations of stable RNA and ribosomes in <i>Rickettsia prowazekii</i>
resolves10.1074/jbc.M603450200
Escherichia coli Transcriptome Dynamics during the Transition from Anaerobic to Aerobic Conditions
resolves10.1074/jbc.M700728200
Transition of Escherichia coli from Aerobic to Micro-aerobic Conditions Involves Fast and Slow Reacting Regulatory Components
resolves10.1128/JB.187.10.3589-3592.2005
Transcriptome Analysis of the Progressive Adaptation of
<i>Lactococcus lactis</i>
to Carbon Starvation
resolves10.1186/1471-2105-7-280
Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks
resolves10.1074/mcp.M400129-MCP200
Multiplexed Protein Quantitation in Saccharomyces cerevisiae Using Amine-reactive Isobaric Tagging Reagents
resolves10.1128/jb.178.16.4942-4947.1996
Fermentative arginine degradation in Halobacterium salinarium (formerly Halobacterium halobium): genes, gene products, and transcripts of the arcRACB gene cluster
resolves10.1186/1471-2105-7-176
The Gaggle: An open-source software system for integrating bioinformatics software and data sources
resolves10.1093/nar/15.3.1281
The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications
resolves10.1021/pr060517v
An iTRAQ-Based Quantitative Analysis To Elaborate the Proteomic Response of <i>Nostoc</i> sp. PCC 7120 under N<sub>2</sub> Fixing Conditions
resolves10.1046/j.1462-2920.2000.00119.x
The role of RNA stability during bacterial stress responses and starvation
resolves10.1038/msb4100091
An integrated systems approach for understanding cellular responses to gamma radiation
resolves10.1099/mic.0.27833-0
Predicted highly expressed genes in the genomes of Streptomyces coelicolor and Streptomyces avermitilis and the implications for their metabolism
resolves10.1016/S0006-3495(03)70013-7
Feedback Regulation in the Lactose Operon: A Mathematical Modeling Study and Comparison with Experimental Data
The 2 references without a DOI — listed, not checked
no DOI — not checkedPhototrophic growth of halobacteria and its use for isolation of photosynthetically-deficient mutants
no DOI — not checkedRobb, F.T. Place, A.R. Sowers, K.R. Schreier, H.J. DasSarma, S. Fleischmann, E.M. (1995) Archaea: A laboratory manual (Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York).
What this badge says. CiteStamped means the CHECKABLE references of this
work were clean at the dated check: each resolved to a known work in a public registry, and none
carried a retraction notice at that time. It says nothing about the quality, findings,
or importance of the work itself, and nothing about references deposited without a DOI.
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