Reference health
Diversity and potential biogeochemical impacts of viruses in bulk and rhizosphere soils
73/73 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
1 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 73 checked references that resolve
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resolves10.1186/s40168-017-0301-7
Environmental drivers of viral community composition in Antarctic soils identified by viromics
resolves10.1111/1462-2920.12528
Metagenomic analysis of the viral community in
<scp>N</scp>
amib
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esert hypoliths
resolves10.1186/s40168-017-0374-3
Dietary energy drives the dynamic response of bovine rumen viral communities
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PERMANOVA, ANOSIM, and the Mantel test in the face of heterogeneous dispersions: What null hypothesis are you testing?
resolves10.1007/s11104-015-2446-0
Impacts of bulk soil microbial community structure on rhizosphere microbiomes of Zea mays
resolves10.1016/j.soilbio.2008.10.024
Impact of wheat straw decomposition on successional patterns of soil microbial community structure
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<i>Microviridae</i>
, a Family Divided: Isolation, Characterization, and Genome Sequence of φMH2K, a Bacteriophage of the Obligate Intracellular Parasitic Bacterium
<i>Bdellovibrio bacteriovorus</i>
resolves10.1038/nrmicro3404
Rising to the challenge: accelerated pace of discovery transforms marine virology
resolves10.1111/1751-7915.13527
Bioarchaeology: a profitable dialogue between microbiology and archaeology
resolves10.1016/j.soilbio.2006.03.003
Diversity and antagonistic potential of Pseudomonas spp. associated to the rhizosphere of maize grown in a subtropical organic farm
resolves10.1128/AEM.66.5.1857-1861.2000
Viral Density and Virus-to-Bacterium Ratio in Deep-Sea Sediments of the Eastern Mediterranean
resolves10.1016/j.soilbio.2017.06.020
Rhizosphere-associated bacterial network structure and spatial distribution differ significantly from bulk soil in wheat crop fields
resolves10.1038/srep45142
Genetic and functional diversity of ubiquitous DNA viruses in selected Chinese agricultural soils
resolves10.1093/nar/gkw370
Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees
resolves10.1111/j.1469-8137.2005.01512.x
Rhizosphere geometry and heterogeneity arising from root‐mediated physical and chemical processes
resolves10.1126/science.aau6389
A specialized metabolic network selectively modulates
<i>Arabidopsis</i>
root microbiota
resolves10.1371/journal.pone.0057355
The Pacific Ocean Virome (POV): A Marine Viral Metagenomic Dataset and Associated Protein Clusters for Quantitative Viral Ecology
resolves10.1186/1471-2105-11-119
Prodigal: prokaryotic gene recognition and translation initiation site identification
resolves10.1186/s40168-019-0675-9
Diversities and potential biogeochemical impacts of mangrove soil viruses
resolves10.1128/AEM.00289-11
Amplification Methods Bias Metagenomic Libraries of Uncultured Single-Stranded and Double-Stranded DNA Viruses
resolves10.1093/bioinformatics/bts611
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
resolves10.1016/j.soilbio.2019.05.011
Rhizosphere size and shape: Temporal dynamics and spatial stationarity
resolves10.1016/j.soilbio.2019.107546
Viral abundance and diversity vary with depth in a southeastern United States agricultural ultisol
resolves10.1021/acs.est.8b03052
Unraveling Microbial Communities Associated with Methylmercury Production in Paddy Soils
resolves10.1186/2049-2618-2-3
Caught in the middle with multiple displacement amplification: the myth of pooling for avoiding multiple displacement amplification bias in a metagenome
resolves10.1186/s40168-018-0522-4
Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems
resolves10.1111/1574-6976.12028
The rhizosphere microbiome: significance of plant beneficial, plant pathogenic, and human pathogenic microorganisms
resolves10.1111/1758-2229.12822
Soil microbial diversity drops with land‐use change in a high mountain temperate forest: a metagenomics survey
resolves10.1093/nar/gkl842
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
resolves10.1038/nrmicro2853
Going viral: next-generation sequencing applied to phage populations in the human gut
resolves10.1038/nature19366
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses
resolves10.7717/peerj.2777
Towards quantitative viromics for both double-stranded and single-stranded DNA viruses
resolves10.1111/1462-2920.13084
Analysis of metagenomic data reveals common features of halophilic viral communities across continents
resolves10.1073/pnas.1908291116
Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil
resolves10.1111/1751-7915.13486
Characterization of
<i>Rhodopseudomonas palustris</i>
population dynamics on tobacco phyllosphere and induction of plant resistance to
<i>Tobacco mosaic virus</i>
resolves10.1371/journal.pbio.0040234
Prevalence and Evolution of Core Photosystem II Genes in Marine Cyanobacterial Viruses and Their Hosts
resolves10.1128/AEM.66.11.4605-4614.2000
Quantitative Analysis of Small-Subunit rRNA Genes in Mixed Microbial Populations via 5′-Nuclease Assays
resolves10.1128/mSystems.00076-18
Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing
resolves10.7717/peerj.7265
Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
resolves10.1146/annurev-virology-101416-041639
Viruses in Soil Ecosystems: An Unknown Quantity Within an Unexplored Territory
resolves10.1186/gb-2014-15-3-r46
Kraken: ultrafast metagenomic sequence classification using exact alignments
resolves10.1007/s00248-017-1049-0
Diversity and Distribution Characteristics of Viruses in Soils of a Marine-Terrestrial Ecotone in East China
resolves10.1186/s40168-019-0647-0
Protist communities are more sensitive to nitrogen fertilization than other microorganisms in diverse agricultural soils
The 1 reference without a DOI — listed, not checked
no DOI — not checkedEstimation of Available Phosphorus in Soils by Extraction with Sodium Bicarbonate
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