Reference health

Use of a filter cartridge combined with intra‐cartridge bead‐beating improves detection of microbial DNA from water samples

https://doi.org/10.1111/2041-210x.13204
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28/28 checkable references clean · checked 2026-07-22

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

7 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

The 28 checked references that resolve
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Back to Basics – The Influence of DNA Extraction and Primer Choice on Phylogenetic Analysis of Activated Sludge Communities
resolves10.1038/nature04159
Marine microorganisms and global nutrient cycles
resolves10.1038/ismej.2010.171
Examining the global distribution of dominant archaeal populations in soil
resolves10.1038/ismej.2015.221
Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre
resolves10.1038/ismej.2017.119
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
resolves10.1038/nmeth.3869
DADA2: High-resolution sample inference from Illumina amplicon data
resolves10.1186/1471-2105-10-421
BLAST+: architecture and applications
resolves10.1038/nmeth.f.303
QIIME allows analysis of high-throughput community sequencing data
resolves10.1038/ismej.2012.8
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
resolves10.1073/pnas.1000080107
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
resolves10.1002/lom3.10221
Open the Sterivex<sup>TM</sup> casing: An easy and effective way to improve DNA extraction yields
resolves10.1111/1755-0998.12421
Optimizing techniques to capture and extract environmental <scp>DNA</scp> for detection and quantification of fish
resolves10.1038/ismej.2011.159
Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients
resolves10.1101/gr.5969107
MEGAN analysis of metagenomic data
resolves10.1186/s13059-016-1103-0
The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics community
resolves10.1128/AEM.00335-09
Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale
resolves10.1371/journal.pone.0061217
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
resolves10.1371/journal.pcbi.1003531
Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
resolves10.1101/pdb.prot5448
Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing
resolves10.1111/j.1365-2672.2012.05384.x
PCR inhibitors - occurrence, properties and removal
resolves10.1111/1462-2920.12254
Distinct dissolved organic matter sources induce rapid transcriptional responses in coexisting populations of <i> <scp>P</scp> rochlorococcus </i> , <i> <scp>P</scp> elagibacter </i> and the <scp>OM60</scp> clade
resolves10.1128/AEM.55.3.548-554.1989
Simple, rapid method for direct isolation of nucleic acids from aquatic environments
resolves10.1111/2041-210X.12683
Comparison of capture and storage methods for aqueous macrobial <scp>eDNA</scp> using an optimized extraction protocol: advantage of enclosed filter
resolves10.1007/s13201-016-0415-2
Plant–microbe interaction in aquatic system and their role in the management of water quality: a review
resolves10.1371/journal.pone.0076910
Two New Computational Methods for Universal DNA Barcoding: A Benchmark Using Barcode Sequences of Bacteria, Archaea, Animals, Fungi, and Land Plants
resolves10.1128/AEM.02692-09
High Abundance of Ammonia-Oxidizing<i>Archaea</i>in Coastal Waters, Determined Using a Modified DNA Extraction Method
resolves10.1038/srep08695
Microbial communities on flower surfaces act as signatures of pollinator visitation
The 7 references without a DOI — listed, not checked
no DOI — not checkedUse of a filter cartridge for filtration of water samples and extraction of environmental DNA
no DOI — not checkedvegan: Community ecology package
no DOI — not checkedR: A language and environment for statistical computing
no DOI — not checkedQuantitative monitoring of multispecies fish environmental DNA using high‐throughput sequencing
no DOI — not checkedtidyverse: Easily install and load the ‘Tidyverse’
no DOI — not checkedcowplot: Streamlined plot theme and plot annotations for ‘ggplot2’
no DOI — not checkedggsci: Scientific Journal and Sci‐Fi Themed Color Palettes for ‘ggplot2’
What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

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