Reference health
Population genomic footprints of selection and associations with climate in natural populations of <i>Arabidopsis halleri</i> from the Alps
60/60 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
3 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 60 checked references that resolve
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Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
resolves10.1038/nrg2896
Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana
resolves10.1534/genetics.110.114819
Using Environmental Correlations to Identify Loci Underlying Local Adaptation
resolves10.1038/nrg3012
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
resolves10.1038/hdy.2010.152
Applications of next generation sequencing in molecular ecology of non-model organisms
resolves10.1111/j.1755-0998.2010.02969.x
Short reads and nonmodel species: exploring the complexities of next‐generation sequence assembly and SNP discovery in the absence of a reference genome
resolves10.1111/j.1365-294X.2012.05731.x
Genome‐wide patterns of latitudinal differentiation among populations of <i><scp>D</scp>rosophila melanogaster</i> from <scp>N</scp>orth <scp>A</scp>merica
resolves10.1111/j.1365-294X.2011.05015.x
Enhanced AFLP genome scans detect local adaptation in high‐altitude populations of a small rodent (<i>Microtus arvalis</i>)
resolves10.1111/j.2397-2335.1922.tb00768.x
On the Interpretation of χ<sup>2</sup> from Contingency Tables, and the Calculation of P
resolves10.1534/genetics.110.114397
The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples
resolves10.1007/s11240-011-9971-1
Transgenic sweetpotato plants expressing an LOS5 gene are tolerant to salt stress
resolves10.1111/mec.12360
Estimation of population allele frequencies from next‐generation sequencing data: pool‐versus individual‐based genotyping
resolves10.18637/jss.v022.i07
The<b>ecodist</b>Package for Dissimilarity-based Analysis of Ecological Data
resolves10.1016/j.pbi.2011.04.003
Metal hyperaccumulation and hypertolerance: a model for plant evolutionary genomics
resolves10.1038/nature06877
Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4
resolves10.1023/A:1013825816443
Introgression between oilseed rape (Brassica napus L.) and its weedy relative B. rapa L. in a natural population
resolves10.1111/j.1365-294X.2010.04761.x
Population history in Arabidopsis halleri using multilocus analysis
resolves10.1007/s10980-005-5245-9
Adaptive vs. neutral genetic diversity: implications for landscape genetics
resolves10.1093/nar/gkf436
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
resolves10.1093/bioinformatics/btr589
PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)
resolves10.1111/j.1365-294X.2012.05486.x
Rapid evolution of an adaptive cyanogenesis cline in introduced North American white clover (<i>Trifolium repens</i> L.)
resolves10.1093/nar/gkr1090
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
resolves10.1093/bioinformatics/btp324
Fast and accurate short read alignment with Burrows–Wheeler transform
resolves10.1111/j.1365-294X.2010.04716.x
Common factors drive adaptive genetic variation at different spatial scales in <i>Arabis alpina</i>
resolves10.1111/j.1365-294X.2012.05656.x
Broad‐scale adaptive genetic variation in alpine plants is driven by temperature and precipitation
resolves10.14806/ej.17.1.200
Cutadapt removes adapter sequences from high-throughput sequencing reads
resolves10.1016/j.plantsci.2010.06.019
The CBFs: Three arabidopsis transcription factors to cold acclimate
resolves10.1111/j.1365-294X.2009.04159.x
Genomic pattern of adaptive divergence in <i>Arabidopsis halleri</i>, a model species for tolerance to heavy metal
resolves10.1105/tpc.106.044230
An
<i>Arabidopsis</i>
Glutathione Peroxidase Functions as Both a Redox Transducer and a Scavenger in Abscisic Acid and Drought Stress Responses
resolves10.1111/j.1469-8137.2011.04003.x
Nuclear and chloroplast DNA phylogeography reveals vicariance among European populations of the model species for the study of metal tolerance,<i>Arabidopsis halleri</i>(Brassicaceae)
resolves10.1126/science.1123542
PIN Proteins Perform a Rate-Limiting Function in Cellular Auxin Efflux
resolves10.1111/j.1365-294X.2010.04696.x
Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina
resolves10.1371/journal.pone.0026872
Does Speciation between Arabidopsis halleri and Arabidopsis lyrata Coincide with Major Changes in a Molecular Target of Adaptation?
resolves10.1093/molbev/mss246
Recent and Ancient Signature of Balancing Selection around the S-Locus in Arabidopsis halleri and A. lyrata
resolves10.1890/07-1162.1
ECOLOGICAL GENETICS IN THE NORTH ATLANTIC: ENVIRONMENTAL GRADIENTS AND ADAPTATION AT SPECIFIC LOCI
resolves10.1146/annurev-ecolsys-110411-160248
Adaptive Genetic Variation on the Landscape: Methods and Cases
resolves10.1111/j.1365-294X.2009.04329.x
The allopolyploid<i>Arabidopsis kamchatica</i>originated from multiple individuals of<i>Arabidopsis lyrata</i>and<i>Arabidopsis halleri</i>
resolves10.1105/tpc.10.10.1623
Involvement of an ABC Transporter in a Developmental Pathway Regulating Hypocotyl Cell Elongation in the Light
resolves10.1098/rstb.2011.0199
What can patterns of differentiation across plant genomes tell us about adaptation and speciation?
resolves10.1038/sj.hdy.6800992
Ecological genomics: understanding gene and genome function in the natural environment
resolves10.1074/jbc.M109275200
Regulation of Osmotic Stress-responsive Gene Expression by theLOS6/ABA1 Locus inArabidopsis
resolves10.1073/pnas.1219381110
Genomic rearrangements and the evolution of clusters of locally adaptive loci
resolves10.2307/3237182
Predictive mapping of alpine grasslands in Switzerland: Species versus community approach
The 3 references without a DOI — listed, not checked
no DOI — not checkedGenomic consequences of multiple speciation processes in a stick insect
no DOI — not checkedR: A Language and Environment for Statistical Computing
no DOI — not checkedValidation of SNP allele frequencies determined by pooled next‐generation sequencing in natural populations of a non‐model plant species
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