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Phylogenomics unravels Quaternary vicariance and allopatric speciation patterns in temperate‐montane plant species: A case study on the <i>Ranunculus auricomus</i> species complex

https://doi.org/10.1111/mec.15458
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References needing attention

does not resolve to a known work10.1101/gr.229202. Article published online before March 2002
The 106 checked references that resolve
resolves10.1111/j.1420-9101.2012.02599.x
Hybridization and speciation
resolves10.1666/0094-8373(2000)26[259:GCCANA]2.0.CO;2
Global climate change and North American mammalian evolution
resolves10.1111/j.1365-294X.2005.02621.x
Impact of ice ages on circumpolar molecular diversity: insights from an ecological key species
resolves10.1016/j.quascirev.2017.11.009
Oceanic heat pulses fueling moisture transport towards continental Europe across the mid-Pleistocene transition
resolves10.1111/j.1558-5646.1967.tb03440.x
SUPPORT FOR BAKER'S LAW-AS A RULE
resolves10.1007/BF01952068
Patterns in plant parthenogenesis
resolves10.1093/bioinformatics/btu170
Trimmomatic: a flexible trimmer for Illumina sequence data
resolves10.7717/peerj.1660
AMAS: a fast tool for alignment manipulation and computing of summary statistics
resolves10.1371/journal.pcbi.1006650
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
resolves10.1016/S0378-1127(01)00646-6
The spread of deciduous Quercus throughout Europe since the last glacial period
resolves10.1093/bioinformatics/btp348
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
resolves10.3732/apps.1400115
MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes
resolves10.1186/s12859-018-2129-y
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
resolves10.1038/srep10098
Transcriptome sequencing of three Ranunculus species (Ranunculaceae) reveals candidate genes in adaptation from terrestrial to aquatic habitats
resolves10.1016/j.quascirev.2006.07.008
The middle Pleistocene transition: characteristics, mechanisms, and implications for long-term changes in atmospheric pCO2
resolves10.1016/S1360-1385(98)01327-2
The effect of Quaternary climatic changes on plant distribution and evolution
resolves10.1038/hdy.2013.1
Geographical parthenogenesis and population genetic structure in the alpine species Ranunculus kuepferi (Ranunculaceae)
resolves10.1111/j.1365-2699.2010.02434.x
Early evolutionary history of the flowering plant family Annonaceae: steady diversification and boreotropical geodispersal
resolves10.1038/nmeth.2109
jModelTest 2: more models, new heuristics and parallel computing
resolves10.1046/j.1365-294X.2002.01618.x
Geographic pattern of genetic variation in the European globeflower<i>Trollius europaeus</i>L. (Ranunculaceae) inferred from amplified fragment length polymorphism markers
resolves10.1017/CBO9781139095112
Bayesian Evolutionary Analysis with BEAST
resolves10.1080/00837792.2011.10670895
The<i>Ranunculus auricomus</i>L. complex (Ranunculaceae) in Central and Southern Italy, with additions to North Italian taxa
resolves10.3372/wi.48.48205
New diploid species in the Ranunculus auricomus complex (Ranunculaceae) from W and SE Europe
resolves10.1126/science.1221294
Evolution of Ocean Temperature and Ice Volume Through the Mid-Pleistocene Climate Transition
resolves10.1016/j.ympev.2010.11.002
The biogeographical history of the cosmopolitan genus Ranunculus L. (Ranunculaceae) in the temperate to meridional zones
resolves10.1111/j.1365-2699.2010.02404.x
Northern Hemisphere origin, transoceanic dispersal, and diversification of Ranunculeae DC. (Ranunculaceae) in the Cenozoic
resolves10.1016/j.ppees.2015.02.001
Phylogenetic relationships and evolution of high mountain buttercups (Ranunculus) in North America and Central Asia
resolves10.1186/s12862-018-1127-z
Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae)
resolves10.1177/1176934317742613
HybPhyloMaker: Target Enrichment Data Analysis From Raw Reads to Species Trees
resolves10.3732/apps.1500039
A protocol for targeted enrichment of intron‐containing sequence markers for recent radiations: A phylogenomic example from <i>Heuchera</i> (Saxifragaceae)
resolves10.1016/j.ympev.2017.02.006
A pilot study applying the plant Anchored Hybrid Enrichment method to New World sages (Salvia subgenus Calosphace; Lamiaceae)
resolves10.1016/j.yqres.2005.02.006
Middle Pleistocene climate and habitat change at Zhoukoudian, China, from the carbon and oxygen isotopic record from herbivore tooth enamel
resolves10.1093/sysbio/syv029
The Challenges of Resolving a Rapid, Recent Radiation: Empirical and Simulated Phylogenomics of Philippine Shrews
resolves10.1016/j.ympev.2018.03.023
Phylogenomic evidence for a recent and rapid radiation of lizards in the Patagonian Liolaemus fitzingerii species group
resolves10.1093/sysbio/syw036
Sequence Capture versus Restriction Site Associated DNA Sequencing for Shallow Systematics
resolves10.1144/GSL.SP.2005.247.01.01
Early-Middle Pleistocene transitions: an overview and recommendation for the defining boundary
resolves10.1016/j.ympev.2018.07.012
Exploring data processing strategies in NGS target enrichment to disentangle radiations in the tribe Cardueae (Compositae)
resolves10.1111/j.1095-8312.1999.tb01160.x
Post-glacial re-colonization of European biota
resolves10.1111/nph.12954
Emergence of apospory and bypass of meiosis via apomixis after sexual hybridisation and polyploidisation
resolves10.1086/386557
Comparative Analysis of Genetic Divergence among Sexual Ancestors of Apomictic Complexes Using Isozyme Data
resolves10.1111/j.1469-8137.2006.01769.x
The complex causality of geographical parthenogenesis
resolves10.1086/591980
Evolutionary Implications of Self‐Compatibility and Reproductive Fitness in the Apomictic<i>Ranunculus auricomus</i>Polyploid Complex (Ranunculaceae)
resolves10.1055/s-2000-9148
Isozyme Variation and Ploidy Levels within the Apomictic <i>Ranunculus auricomus</i> Complex: Evidence for a Sexual Progenitor Species in Southeastern Austria
resolves10.1002/tax.584012
Reticulate evolution and taxonomic concepts in the <i>Ranunculus auricomus</i> complex (Ranunculaceae): insights from analysis of morphological, karyological and molecular data
resolves10.1093/molbev/msj030
Application of Phylogenetic Networks in Evolutionary Studies
resolves10.1093/bioinformatics/btq243
The Newick utilities: high-throughput phylogenetic tree processing in the U<scp>nix</scp> shell
resolves10.1098/rstb.2003.1389
Quaternary diversification in European alpine plants: pattern and process
resolves10.1093/molbev/mst010
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
resolves10.1111/ele.12908
Reconstructing geographical parthenogenesis: effects of niche differentiation and reproductive mode on Holocene range expansion of an alpine plant
resolves10.1371/journal.pbio.0030014
Relaxed Molecular Clock Provides Evidence for Long-Distance Dispersal of Nothofagus (Southern Beech)
resolves10.1046/j.1365-294x.2001.01206.x
Did the Pleistocene glaciations promote divergence? Tests of explicit refugial models in montane grasshopprers
resolves10.3417/2006102
Resolving Species Phylogenies of Recent Evolutionary Radiations<sup>1</sup>
resolves10.1111/j.1438-8677.2008.00130.x
Multiple glacial refugia and complex postglacial range shifts of the obligatory woodland plant <i>Polygonatum verticillatum</i> (Convallariaceae)
resolves10.1046/j.1365-294X.2003.01781.x
Differential cycles of range contraction and expansion in European high mountain plants during the Late Quaternary: insights from <i>Pritzelago alpina</i> (L.) O. Kuntze (Brassicaceae)
resolves10.1080/10635150601146041
Inconsistency of Phylogenetic Estimates from Concatenated Data under Coalescence
resolves10.1093/molbev/msr202
Statistics and Truth in Phylogenomics
resolves10.2307/1218997
MINORITY CYTOTYPE EXCLUSION IN LOCAL PLANT POPULATIONS
resolves10.1093/bioinformatics/btp352
The Sequence Alignment/Map format and SAMtools
resolves10.1093/bioinformatics/btp324
Fast and accurate short read alignment with Burrows–Wheeler transform
resolves10.1029/2004PA001071
A Pliocene‐Pleistocene stack of 57 globally distributed benthic δ<sup>18</sup>O records
resolves10.1186/1471-2148-11-152
PhyDesign: an online application for profiling phylogenetic informativeness
resolves10.1111/j.1365-2699.2007.01803.x
Patterns of post‐glacial spread and the extent of glacial refugia of European beech (<i>Fagus sylvatica</i>)
resolves10.1016/j.quaint.2012.02.028
Early to Middle Pleistocene dynamics of plant and mammal communities in South West Europe
resolves10.1111/j.1469-8137.2006.01740.x
A new scenario for the Quaternary history of European beech populations: palaeobotanical evidence and genetic consequences
resolves10.1080/00087114.1994.10797287
<i>Ranunculus auricomus</i>L. aggr. (Ranunculaceae) in Italy. I. Sexual tetraploids on the Apennines
resolves10.21425/F55419694
Probabilistic historical biogeography: new models for founder-event speciation, imperfect detection, and fossils allow improved accuracy and model-testing
resolves10.1371/journal.pone.0054848
A Phylogeny of Birds Based on Over 1,500 Loci Collected by Target Enrichment and High-Throughput Sequencing
resolves10.1002/aps3.1038
Practical considerations for plant phylogenomics
resolves10.1186/1471-2148-7-233
Glacial vicariance in Eurasia: mitochondrial DNA evidence from Scots pine for a complex heritage involving genetically distinct refugia at mid-northern latitudes and in Asia Minor
resolves10.1093/bioinformatics/bty633
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
resolves10.1016/j.crte.2007.09.019
The Alleret maar (Massif Central, France): A new lacustrine sequence of the early Middle Pleistocene in western Europe
resolves10.1111/j.1469-8137.2006.01738.x
The role of hybridization, polyploidization and glaciation in the origin and evolution of the apomictic<i>Ranunculus cassubicus</i>complex
resolves10.1002/ajb2.1016
Quartet Sampling distinguishes lack of support from conflicting support in the green plant tree of life
resolves10.1111/mec.12533
Asexual genome evolution in the apomictic <i><scp>R</scp>anunculus auricomus</i> complex: examining the effects of hybridization and mutation accumulation
resolves10.1093/bioinformatics/bti079
HyPhy: hypothesis testing using phylogenies
resolves10.1371/journal.pone.0009490
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
resolves10.1016/j.ympev.2009.01.016
Did glacials and/or interglacials promote allopatric incipient speciation in East Asian temperate plants? Phylogeographic and coalescent analyses on refugial isolation and divergence in Dysosma versipellis
resolves10.1126/science.1123296
Plio-Pleistocene Ice Volume, Antarctic Climate, and the Global δ <sup>18</sup> O Record
resolves10.1111/j.1095-8312.2007.00933.x
Glacial history of Saxifraga paniculata (Saxifragaceae): molecular biogeography of a disjunct arctic-alpine species from Europe and North America
resolves10.1146/annurev-ecolsys-102209-144710
Phylogenetic Methods in Biogeography
resolves10.1016/j.epsl.2016.05.018
Tropically-driven climate shifts in southwestern Europe during MIS 19, a low eccentricity interglacial
resolves10.1093/oxfordjournals.molbev.a003974
Estimating Absolute Rates of Molecular Evolution and Divergence Times: A Penalized Likelihood Approach
resolves10.1007/s12052-012-0421-2
Historical Biogeography: Evolution in Time and Space
resolves10.1111/boj.12132
Southern isolation and northern long-distance dispersal shaped the phylogeography of the widespread, but highly disjunct, European high mountain plant<i>Artemisia eriantha</i>(Asteraceae)
resolves10.1093/molbev/msw079
Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies
resolves10.1111/j.1365-294X.2005.02683.x
Molecular evidence for glacial refugia of mountain plants in the European Alps
resolves10.2307/25065429
Vicariance and dispersal in the alpine perennial <i>Bupleurum stellatum</i> L. (Apiaceae)
resolves10.1093/bioinformatics/btu033
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
resolves10.1016/j.ympev.2015.01.015
Resolving phylogenetic relationships of the recently radiated carnivorous plant genus Sarracenia using target enrichment
resolves10.1046/j.1365-294x.1998.00289.x
Comparative phylogeography and postglacial colonization routes in Europe
resolves10.1093/botlinnean/bow009
Frozen ploidies: a phylogeographical analysis of the Leucanthemopsis alpina polyploid complex (Asteraceae, Anthemideae)
resolves10.1080/10635150701311362
Profiling Phylogenetic Informativeness
resolves10.3732/ajb.89.12.2024
<i>Saponaria Pumila</i> (Caryophyllaceae) and the Ice Age in the European Alps
resolves10.1111/jbi.12727
Evaluating the influence of connectivity and distance on biogeographical patterns in the south‐western deserts of North America
resolves10.2307/3647383
Molecular evidence for multiple diversification patterns of alpine plants in Mediterranean Europe
resolves10.1093/molbev/mss008
Concatenation and Concordance in the Reconstruction of Mouse Lemur Phylogeny: An Empirical Demonstration of the Effect of Allele Sampling in Phylogenetics
resolves10.3732/apps.1400042
Hyb‐Seq: Combining target enrichment and genome skimming for plant phylogenomics
resolves10.1016/S0169-5347(01)02163-2
Glacial refugia: sanctuaries for allelic richness, but not for gene diversity
resolves10.1073/pnas.86.16.6201
Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data.
resolves10.1371/journal.pone.0052249
FastUniq: A Fast De Novo Duplicates Removal Tool for Paired Short Reads
resolves10.1093/molbev/msm088
PAML 4: Phylogenetic Analysis by Maximum Likelihood
resolves10.1016/j.ympev.2013.04.007
Phylogeographic analysis of a temperate-deciduous forest restricted plant (Bupleurum longiradiatum Turcz.) reveals two refuge areas in China with subsequent refugial isolation promoting speciation
resolves10.1111/bor.12262
High‐latitude vegetation and climate changes during the Mid‐Pleistocene Transition inferred from a palynological record from Lake El'gygytgyn, <scp>NE</scp> Russian Arctic
resolves10.1016/j.palaeo.2018.06.007
Vegetation change and evolutionary response of large mammal fauna during the Mid-Pleistocene Transition in temperate northern East Asia
The 10 references without a DOI — listed, not checked
no DOI — not checkedEvolución en Anacyclus L. (Anthemideae, Asteraceae). Análisis de la zona de contacto entre A. clavatus (Desf.) Pers. y A. valentinus L.
no DOI — not checkedAllele phasing greatly improves the phylogenetic utility of ultraconserved elements
no DOI — not checkedR: A language and environment for statistical computing
no DOI — not checkedPhylogenomics supported by geometric morphometrics reveals delimitation of sexual species within the polyploid apomictic Ranunculus auricomus complex (Ranunculaceae)
no DOI — not checkedBioGeoBEARS: BioGeography with Bayesian (and likelihood) evolutionary analysis with R scripts. Version 1.1.1
no DOI — not checkedMolecular population genetics and evolution
no DOI — not checkedTracer v1.4: MCMC trace analyses tool
no DOI — not checkedYearbook of Science and Technology
no DOI — not checkedPolyploidy and the distribution of the Arctic‐Alpine flora: New evidence and a new approach
no DOI — not checkedPollen analysis of Malopolanian Interglacial deposits at Lowisko (Kolbuszowa Upland, southern Poland)
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