Reference health
Convergence of <scp>CONSTITUTIVE PHOTOMORPHOGENESIS</scp> 1 and <scp>PHYTOCHROME INTERACTING FACTOR</scp> signalling during shade avoidance
57/57 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
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The 57 checked references that resolve
resolves10.1016/j.molcel.2006.06.011
Photoactivated Phytochrome Induces Rapid PIF3 Phosphorylation Prior to Proteasome-Mediated Degradation
resolves10.1105/tpc.021568
Constitutive Photomorphogenesis 1 and Multiple Photoreceptors Control Degradation of Phytochrome Interacting Factor 3, a Transcription Factor Required for Light Signaling in Arabidopsis
resolves10.1104/pp.112.201921
Stem Transcriptome Reveals Mechanisms to Reduce the Energetic Cost of Shade-Avoidance Responses in Tomato
resolves10.1146/annurev-arplant-050312-120221
Photoreceptor Signaling Networks in Plant Responses to Shade
resolves10.1111/j.1365-313X.2010.04360.x
AtBBX21 and COP1 genetically interact in the regulation of shade avoidance
resolves10.1104/pp.105.063743
Genome-Wide Identification and Testing of Superior Reference Genes for Transcript Normalization in Arabidopsis
resolves10.1038/nature06520
A molecular framework for light and gibberellin control of cell elongation
resolves10.1016/j.cub.2004.12.026
The Degradation of HFR1, a Putative bHLH Class Transcription Factor Involved in Light Signaling, Is Regulated by Phosphorylation and Requires COP1
resolves10.1093/emboj/19.18.4997
HY5 stability and activity in Arabidopsis is regulated by phosphorylation in its COP1 binding domain
resolves10.1101/gad.969702
Two interacting bZIP proteins are direct targets of COP1-mediated control of light-dependent gene expression in <i>Arabidopsis</i>
resolves10.1111/j.1365-313X.2012.05033.x
Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling
resolves10.1038/emboj.2009.306
Inhibition of the shade avoidance response by formation of non‐DNA binding bHLH heterodimers
resolves10.1101/gad.1247205
HFR1 is targeted by COP1 E3 ligase for post-translational proteolysis during phytochrome A signaling
resolves10.1111/tpj.12395
Reduced phototropism in <i>pks</i> mutants may be due to altered auxin‐regulated gene expression or reduced lateral auxin transport
resolves10.1111/j.1365-313X.2011.04598.x
Cryptochrome 1 and phytochrome B control shade‐avoidance responses in Arabidopsis via partially independent hormonal cascades
resolves10.1046/j.1365-313X.2002.01326.x
HFR1, a phytochrome A‐signalling component, acts in a separate pathway from HY5, downstream of COP1 in <i>Arabidopsis thaliana</i>
resolves10.1105/tpc.107.052142
The
<i>Arabidopsis</i>
Phytochrome-Interacting Factor PIF7, Together with PIF3 and PIF4, Regulates Responses to Prolonged Red Light by Modulating phyB Levels
resolves10.1093/mp/sss031
Phytochrome Signaling in Green Arabidopsis Seedlings: Impact Assessment of a Mutually Negative phyB–PIF Feedback Loop
resolves10.1016/j.cub.2008.10.058
Multiple Phytochrome-Interacting bHLH Transcription Factors Repress Premature Seedling Photomorphogenesis in Darkness
resolves10.1105/tpc.112.095711
Dynamic Antagonism between Phytochromes and PIF Family Basic Helix-Loop-Helix Factors Induces Selective Reciprocal Responses to Light and Shade in a Rapidly Responsive Transcriptional Network in <i>Arabidopsis</i>
resolves10.1111/j.1365-313X.2007.03341.x
Phytochrome‐mediated inhibition of shade avoidance involves degradation of growth‐promoting bHLH transcription factors
resolves10.1111/tpj.12153
Light and the E3 ubiquitin ligase <scp>COP</scp>1/<scp>SPA</scp> control the protein stability of the <scp>MYB</scp> transcription factors <scp>PAP</scp>1 and <scp>PAP</scp>2 involved in anthocyanin accumulation in Arabidopsis
resolves10.1073/pnas.0407107101
The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development
resolves10.1111/j.1365-313X.2006.02773.x
Light activates the degradation of PIL5 protein to promote seed germination through gibberellin in Arabidopsis
resolves10.1038/35013076
Targeted destabilization of HY5 during light-regulated development of Arabidopsis
resolves10.1093/pcp/pch125
Degradation of Phytochrome Interacting Factor 3 in Phytochrome-Mediated Light Signaling
resolves10.1111/j.1365-313X.2012.05114.x
Phytochrome B inhibits binding of phytochrome‐interacting factors to their target promoters
resolves10.1016/j.cell.2015.12.018
Cryptochromes Interact Directly with PIFs to Control Plant Growth in Limiting Blue Light
resolves10.1104/pp.112.207233
Arabidopsis <i>COP1</i> and <i>SPA</i> Genes Are Essential for Plant Elongation But Not for Acceleration of Flowering Time in Response to a Low Red Light to Far-Red Light Ratio
resolves10.1101/gad.1122903
The COP1–SPA1 interaction defines a critical step in phytochrome A-mediated regulation of HY5 activity
resolves10.1104/pp.110.160820
Cryptochrome as a Sensor of the Blue/Green Ratio of Natural Radiation in Arabidopsis
resolves10.1016/j.cub.2009.05.062
Synergism of Red and Blue Light in the Control of Arabidopsis Gene Expression and Development
resolves10.1093/mp/ssr122
Diurnal Dependence of Growth Responses to Shade in Arabidopsis: Role of Hormone, Clock, and Light Signaling
resolves10.1111/j.1365-313X.2011.04745.x
Repression of shade‐avoidance reactions by sunfleck induction of <i>HY5</i> expression in Arabidopsis
resolves10.1038/nature01696
LAF1 ubiquitination by COP1 controls photomorphogenesis and is stimulated by SPA1
resolves10.1105/tpc.108.060020
Light-Induced Phosphorylation and Degradation of the Negative Regulator PHYTOCHROME-INTERACTING FACTOR1 from<i>Arabidopsis</i>Depend upon Its Direct Physical Interactions with Photoactivated Phytochromes
resolves10.1104/pp.107.105601
Phytochrome Induces Rapid PIF5 Phosphorylation and Degradation in Response to Red-Light Activation
resolves10.1111/j.1365-313X.2006.03021.x
PIF3 regulates anthocyanin biosynthesis in an HY5‐dependent manner with both factors directly binding anthocyanin biosynthetic gene promoters in Arabidopsis
resolves10.1105/tpc.111.088047
The <i>Arabidopsis</i> YUCCA1 Flavin Monooxygenase Functions in the Indole-3-Pyruvic Acid Branch of Auxin Biosynthesis
resolves10.1016/j.cell.2008.01.049
Rapid Synthesis of Auxin via a New Tryptophan-Dependent Pathway Is Required for Shade Avoidance in Plants
resolves10.1371/journal.pgen.1004416
The HY5-PIF Regulatory Module Coordinates Light and Temperature Control of Photosynthetic Gene Transcription
resolves10.1104/pp.114.242438
Phytochrome B Nuclear Bodies Respond to the Low Red to Far-Red Ratio and to the Reduced Irradiance of Canopy Shade in Arabidopsis
resolves10.1104/pp.109.136028
Unraveling Transcriptional Control in Arabidopsis Using cis-Regulatory Elements and Coexpression Networks
resolves10.1016/j.tplants.2011.05.011
Phytochrome signaling: solving the Gordian knot with microbial relatives
resolves10.1073/pnas.1108436108
Conversion of tryptophan to indole-3-acetic acid by TRYPTOPHAN AMINOTRANSFERASES OF
<i>ARABIDOPSIS</i>
and YUCCAs in
<i>Arabidopsis</i>
resolves10.1105/tpc.114.125591
PHYTOCHROME INTERACTING FACTOR1 Enhances the E3 Ligase Activity of CONSTITUTIVE PHOTOMORPHOGENIC1 to Synergistically Repress Photomorphogenesis in <i>Arabidopsis</i>
resolves10.1105/tpc.104.030205
Light Regulates COP1-Mediated Degradation of HFR1, a Transcription Factor Essential for Light Signaling in Arabidopsis
resolves10.1371/journal.pgen.1003244
A Quartet of PIF bHLH Factors Provides a Transcriptionally Centered Signaling Hub That Regulates Seedling Morphogenesis through Differential Expression-Patterning of Shared Target Genes in Arabidopsis
resolves10.1105/tpc.107.056580
Biochemical Characterization of<i>Arabidopsis</i>Complexes Containing CONSTITUTIVELY PHOTOMORPHOGENIC1 and SUPPRESSOR OF PHYA Proteins in Light Control of Plant Development
The 2 references without a DOI — listed, not checked
no DOI — not checkedModel‐based analysis of oligonucleotide arrays: model validation, design issues and standard error application
no DOI — not checkedGenetic and molecular analysis of an allelic series of cop1 mutants suggests functional roles for the multiple protein domains
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