Reference health
Phylogenetic signal of host plants in the bacterial and fungal root microbiomes of cultivated angiosperms
45/45 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
3 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 45 checked references that resolve
resolves10.1007/s00253-009-2092-7
Plant–microbe interactions promoting plant growth and health: perspectives for controlled use of microorganisms in agriculture
resolves10.1111/mec.12821
Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants
resolves10.1111/j.1365-294X.2011.05359.x
Is diversification history of maize influencing selection of soil bacteria by roots?
resolves10.1111/1462-2920.12442
Root microbiome relates to plant host evolution in maize and other
<scp>P</scp>
oaceae
resolves10.1016/j.chom.2015.01.011
Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley
resolves10.1038/nature11336
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
resolves10.1038/nature21417
Root microbiota drive direct integration of phosphate stress and immunity
resolves10.1128/JB.185.24.7266-7272.2003
Legume Symbiotic Nitrogen Fixation byβ-Proteobacteria Is Widespread inNature
resolves10.1111/nph.13697
Plant compartment and biogeography affect microbiome composition in cultivated and native <i>Agave</i> species
resolves10.1016/j.soilbio.2009.11.024
Plant growth-promoting bacteria in the rhizo- and endosphere of plants: Their role, colonization, mechanisms involved and prospects for utilization
resolves10.1128/AEM.03006-05
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
resolves10.1089/cmb.2006.13.320
A Hybrid Micro–Macroevolutionary Approach to Gene Tree Reconstruction
resolves10.1073/pnas.1414592112
Structure, variation, and assembly of the root-associated microbiomes of rice
resolves10.1016/j.funeco.2009.07.003
Functional diversity in arbuscular mycorrhiza – the role of gene expression, phosphorous nutrition and symbiotic efficiency
resolves10.1073/pnas.1717617115
Assembly and ecological function of the root microbiome across angiosperm plant species
resolves10.1146/annurev-phyto-080516-035623
Interplay Between Innate Immunity and the Plant Microbiota
resolves10.1128/MMBR.00050-14
The Hidden World within Plants: Ecological and Evolutionary Considerations for Defining Functioning of Microbial Endophytes
resolves10.1371/journal.pone.0040863
High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples
resolves10.1128/AEM.63.4.1489-1497.1997
Analysis of ammonia-oxidizing bacteria of the beta subdivision of the class Proteobacteria in coastal sand dunes by denaturing gradient gel electrophoresis and sequencing of PCR-amplified 16S ribosomal DNA fragments
resolves10.1104/pp.114.245811
Functional Soil Microbiome: Belowground Solutions to an Aboveground Problem
resolves10.1126/science.aaa8764
Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa
resolves10.1093/bioinformatics/btr507
FLASH: fast length adjustment of short reads to improve genome assemblies
resolves10.1007/s11104-015-2703-2
Impacts of root symbiotic associations on interspecific variation in sugar exudation rates and rhizosphere microbial communities: a comparison among four plant families
resolves10.1099/ijs.0.02879-0
Burkholderia tropica sp. nov., a novel nitrogen-fixing, plant-associated bacterium
resolves10.1073/pnas.1321597111
Quantitative divergence of the bacterial root microbiota in
<i>Arabidopsis thaliana</i>
relatives
resolves10.1111/j.1462-2920.2006.01172.x
Desulfurization of aromatic sulfonates by rhizosphere bacteria: high diversity of the
<i>asfA</i>
gene
resolves10.1073/pnas.87.12.4640
rbcL sequence divergence and phylogenetic relationships in Saxifragaceae sensu lato.
resolves10.1016/j.tplants.2016.01.008
Metabolomics in the Rhizosphere: Tapping into Belowground Chemical Communication
resolves10.1038/ncomms12151
Host genotype and age shape the leaf and root microbiomes of a wild perennial plant
resolves10.1371/journal.pone.0204085
Soil productivity and structure of bacterial and fungal communities in unfertilized arable soil
resolves10.1111/1758-2229.12641
Contrasting P acquisition strategies of the bacterial communities associated with legume and grass in subtropical orchard soil
The 3 references without a DOI — listed, not checked
no DOI — not checkedOksanen J.(2007)Multivariate analysis of ecological Communities in R: vegan tutorial.
no DOI — not checkedStevens P.F.(2017onwards).Angiosperm Phylogeny Website. Version 14 July 2017. Available at:http://www.mobot.org/MOBOT/research/APweb/
no DOI — not checkedChloroplast DNA evolves slowly in the palm family (Arecaceae)
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