Reference health
A renaissance of microRNAs as taxonomic and phylogenetic markers in animals
1 of 82 checkable references need attention · checked 2026-07-22
At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.
2 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
References needing attention
does not resolve to a known work10.1038/s41580‐024‐00726‐y
The 81 checked references that resolve
resolves10.1093/nar/gkz415
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression
resolves10.1105/tpc.17.00851
Revisiting Criteria for Plant MicroRNA Annotation in the Era of Big Data
resolves10.2307/2399880
The its Region of Nuclear Ribosomal DNA: A Valuable Source of Evidence on Angiosperm Phylogeny
resolves10.1007/s13127-019-00412-4
Recent progress in reconstructing lophotrochozoan (spiralian) phylogeny
resolves10.1073/pnas.1105499108
MicroRNAs and phylogenomics resolve the relationships of Tardigrada and suggest that velvet worms are the sister group of Arthropoda
resolves10.1093/nar/gks1474
Deep sequencing of small RNAs identifies canonical and non-canonical miRNA and endogenous siRNAs in mammalian somatic tissues
resolves10.1017/S0031182013000917
Deep sequencing-based identification of pathogen-specific microRNAs in the plasma of rabbits infected with<i>Schistosoma japonicum</i>
resolves10.1101/gad.1884710
Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
resolves10.2174/1875693X00801010022
miRNA Profile of a Triassic Common Mammalian Ancestor and PremiRNA Evolution in the Three Mammalian Reproductive Lineages
resolves10.1038/nature06614
Broad phylogenomic sampling improves resolution of the animal tree of life
resolves10.1007/s13127-011-0044-4
Higher-level metazoan relationships: recent progress and remaining questions
resolves10.1126/science.1206375
The Cambrian Conundrum: Early Divergence and Later Ecological Success in the Early History of Animals
resolves10.1093/nar/gkr688
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
resolves10.1146/annurev-genet-120213-092023
A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome
resolves10.1016/j.ijpara.2014.05.010
MicroRNA loci support conspecificity of Gyrodactylus salaris and Gyrodactylus thymalli (Platyhelminthes: Monogenea)
resolves10.1261/rna.078410.120
Ancient microRNA profiles of 14,300-yr-old canid samples confirm taxonomic origin and provide glimpses into tissue-specific gene regulation from the Pleistocene
resolves10.3390/ncrna5010019
Evolutionary Implications of the microRNA- and piRNA Complement of Lepidodermella squamata (Gastrotricha)
resolves10.1093/molbev/mst155
Substantial Loss of Conserved and Gain of Novel MicroRNA Families in Flatworms
resolves10.1007/s10096-019-03715-8
Circulatory microRNAs: promising non-invasive prognostic and diagnostic biomarkers for parasitic infections
resolves10.1038/nature07415
Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
resolves10.1093/nar/gkp347
miRanalyzer: a microRNA detection and analysis tool for next-generation sequencing experiments
resolves10.1016/j.ympev.2012.03.017
Deep sequencing of small RNAs confirms an annelid affinity of Myzostomida
resolves10.1186/s13059-018-1588-9
miRTrace reveals the organismal origins of microRNA sequencing data
resolves10.1098/rspb.2014.2983
The phylogenetic utility and functional constraint of microRNA flanking sequences
resolves10.1126/science.1065062
An Abundant Class of Tiny RNAs with Probable Regulatory Roles in
<i>Caenorhabditis elegans</i>
resolves10.7554/eLife.36278
Support for a clade of Placozoa and Cnidaria in genes with minimal compositional bias
resolves10.1016/0092-8674(93)90529-Y
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
resolves10.1038/s41598-017-05070-0
Bias in recent miRBase annotations potentially associated with RNA quality issues
resolves10.1186/gb-2008-9-6-r94
Chætognath transcriptome reveals ancestral and unique features among bilaterians
resolves10.1016/j.cell.2023.08.027
Stepwise emergence of the neuronal gene expression program in early animal evolution
resolves10.1038/35040556
Conservation of the sequence and temporal expression of let-7 heterochronic regulatory RNA
resolves10.1186/s13071-015-0656-1
Extracellular Onchocerca-derived small RNAs in host nodules and blood
resolves10.1016/j.cell.2006.10.040
Large-Scale Sequencing Reveals 21U-RNAs and Additional MicroRNAs and Endogenous siRNAs in C. elegans
resolves10.1101/gr.6597907
Evolution, biogenesis, expression, and target predictions of a substantially expanded set of <i>Drosophila</i> microRNAs
resolves10.1126/science.1242592
The Genome of the Ctenophore
<i>Mnemiopsis leidyi</i>
and Its Implications for Cell Type Evolution
resolves10.1016/j.fsigen.2017.02.002
Identification of organ tissue types and skin from forensic samples by microRNA expression analysis
resolves10.1101/2022.06.24.497508
The slowly evolving genome of the xenacoelomorph worm
<i>Xenoturbella bocki</i>
resolves10.1002/jez.b.21118
The phylogenetic distribution of metazoan microRNAs: insights into evolutionary complexity and constraint
resolves10.1016/j.cub.2017.02.031
A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals
resolves10.1371/journal.pbio.3000166
Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival
resolves10.1093/acprof:oso/9780199549429.003.0015
MicroRNAs and metazoan phylogeny: big trees from little genes
resolves10.1002/edn3.386
Environmental <scp>RNA</scp> applications and their associated gene targets for management and conservation
resolves10.1016/j.molbiopara.2014.11.001
Loa loa and Onchocerca ochengi miRNAs detected in host circulation
resolves10.1016/j.xgen.2023.100348
Accurate microRNA annotation of animal genomes using trained covariance models of curated microRNA complements in MirMachine
resolves10.3389/fgene.2011.00025
Systematic Curation of miRBase Annotation Using Integrated Small RNA High-Throughput Sequencing Data for C. elegans and Drosophila
resolves10.1111/brv.13033
Convergent and divergent evolution of <scp>microRNA</scp>‐mediated regulation in metazoans
resolves10.1038/sdata.2016.18
The FAIR Guiding Principles for scientific data management and stewardship
resolves10.1073/pnas.74.11.5088
Phylogenetic structure of the prokaryotic domain: The primary kingdoms
resolves10.1126/sciadv.add9938
MicroRNAs are deeply linked to the emergence of the complex octopus brain
The 2 references without a DOI — listed, not checked
no DOI — not checkedMicroRNA nomenclature and the need for a revised naming prescription
no DOI — not checkedPaleogenomics: Genome‐scale analysis of ancient DNA
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