Reference health
16S rRNA Gene-Based Oligonucleotide Microarray for Environmental Monitoring of the Betaproteobacterial Order “<i>Rhodocyclales</i>”
57/57 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
6 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 57 checked references that resolve
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Dechloromonas agitata gen. nov., sp. nov. and Dechlorosoma suillum gen. nov., sp. nov., two novel environmentally dominant (per)chlorate-reducing bacteria and their phylogenetic position.
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In situ visualization of high genetic diversity in a natural microbial community
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Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
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Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
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Taxonomic Position of Aromatic-Degrading Denitrifying Pseudomonad Strains K 172 and KB 740 and Their Description as New Members of the Genera Thauera, as Thauera aromatica sp. nov., and Azoarcus, as Azoarcus evansii sp. nov., Respectively, Members of the Beta Subclass of the Proteobacteria
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A Nested Array of rRNA Targeted Probes for the Detection and Identification of Enterococci by Reverse Hybridization
resolves10.1046/j.1462-2920.2003.00450.x
Development and validation of a diagnostic microbial microarray for methanotrophs
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Ubiquity and Diversity of Dissimilatory (Per)chlorate-Reducing Bacteria
resolves10.1093/nar/gkg039
The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
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Identification of Polyphosphate-Accumulating Organisms and Design of 16S rRNA-Directed Probes for Their Detection and Quantitation
resolves10.1016/S0723-2020(99)80053-8
The Domain-specific Probe EUB338 is Insufficient for the Detection of all Bacteria: Development and Evaluation of a more Comprehensive Probe Set
resolves10.1128/AEM.69.4.2377-2382.2003
Direct Profiling of Environmental Microbial Populations by Thermal Dissociation Analysis of Native rRNAs Hybridized to Oligonucleotide Microarrays
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Preferential occurrence of diazotrophic endophytes,
<i>Azoarcus</i>
spp., in wild rice species and land races of
<i>Oryza sativa</i>
in comparison with modern races
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Emended description of the order Chlamydiales, proposal of Parachlamydiaceae fam. nov. and Simkaniaceae fam. nov., each containing one monotypic genus, revised taxonomy of the family Chlamydiaceae, including a new genus and five new species, and standards for the identification of organisms
resolves10.1093/nar/26.6.1515
Parallel thermodynamic analysis of duplexes on oligodeoxyribonucleotide microchips
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Rapid Method for Coextraction of DNA and RNA from Natural Environments for Analysis of Ribosomal DNA- and rRNA-Based Microbial Community Composition
resolves10.1128/aem.63.6.2397-2402.1997
Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology
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Modeling of DNA microarray data by using physical properties of hybridization
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In situ analysis of denitrifying toluene- and m-xylene-degrading bacteria in a diesel fuel-contaminated laboratory aquifer column
resolves10.1016/S0723-2020(99)80055-1
Enrichment, Phylogenetic Analysis and Detection of a Bacterium That Performs Enhanced Biological Phosphate Removal in Activated Sludge
resolves10.1128/aem.61.6.2257-2261.1995
Identification of grass-associated and toluene-degrading diazotrophs, Azoarcus spp., by analyses of partial 16S ribosomal DNA sequences
resolves10.1078/0723-2020-00093
The Microbial Community Composition of a Nitrifying-Denitrifying Activated Sludge from an Industrial Sewage Treatment Plant Analyzed by the Full-Cycle rRNA Approach
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Combined Molecular and Conventional Analyses of Nitrifying Bacterium Diversity in Activated Sludge:
<i>Nitrosococcus mobilis</i>
and
<i>Nitrospira</i>
-Like Bacteria as Dominant Populations
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Monitoring the enrichment and isolation of sulfate-reducing bacteria by using oligonucleotide hybridization probes designed from environmentally derived 16S rRNA sequences
resolves10.1046/j.1462-2920.2001.00233.x
Optimization of an oligonucleotide microchip for microbial identification studies: a non‐equilibrium dissociation approach
resolves10.1128/AEM.68.10.5064-5081.2002
Oligonucleotide Microarray for 16S rRNA Gene-Based Detection of All Recognized Lineages of Sulfate-Reducing Prokaryotes in the Environment
resolves10.1016/S0723-2020(11)80121-9
Phylogenetic Oligodeoxynucleotide Probes for the Major Subclasses of Proteobacteria: Problems and Solutions
resolves10.1093/nar/20.7.1675
Parallel analysis of oligodeoxyribonucleotide (oligonucleotide) interactions. I. Analysis of factors influencing oligonucleotide duplex formation
resolves10.1007/s00203-002-0422-6
Phylogenetic and metabolic diversity of bacteria degrading aromatic compounds under denitrifying conditions, and description of Thauera phenylacetica sp. nov., Thauera aminoaromatica sp. nov., and Azoarcus buckelii sp. nov.
resolves10.1128/AEM.69.3.1397-1407.2003
Optimization Strategies for DNA Microarray-Based Detection of Bacteria with 16S rRNA-Targeting Oligonucleotide Probes
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Phylogeny of All Recognized Species of Ammonia Oxidizers Based on Comparative 16S rRNA and
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Sequence Analysis: Implications for Molecular Diversity Surveys
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Anaerobic utilization of alkylbenzenes and
<i>n</i>
‐alkanes from crude oil in an enrichment culture of denitrifying bacteria affiliating with the β‐subclass of
<i>Proteobacteria</i>
resolves10.1099/00207713-43-3-574
Azoarcus gen. nov., Nitrogen-Fixing Proteobacteria Associated with Roots of Kallar Grass (Leptochloa fusca (L.) Kunth), and Description of Two Species, Azoarcus indigens sp. nov. and Azoarcus communis sp. nov.
resolves10.1016/S0723-2020(00)80050-8
Molecular Evidence for Genus Level Diversity of Bacteria Capable of Catalyzing Anaerobic Ammonium Oxidation
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Aerobic and Anaerobic Toluene Degradation by a Newly Isolated Denitrifying Bacterium,
<i>Thauera</i>
sp. Strain DNT-1
resolves10.1128/AEM.67.10.4708-4716.2001
Direct Detection of 16S rRNA in Soil Extracts by Using Oligonucleotide Microarrays
resolves10.1099/00207713-51-2-589
Characterization of halobenzoate-degrading, denitrifying Azoarcus and Thauera isolates and description of Thauera chlorobenzoica sp. nov.
resolves10.1109/CSB.2002.1039325
AxML: a fast program for sequential and parallel phylogenetic tree calculations based on the maximum likelihood method
resolves10.1111/j.1462-2920.2004.00582.x
Optimization of diagnostic microarray for application in analysing landfill methanotroph communities under different plant covers
resolves10.1093/oxfordjournals.molbev.a025664
Quartet Puzzling: A Quartet Maximum-Likelihood Method for Reconstructing Tree Topologies
resolves10.1128/AEM.69.2.1159-1171.2003
Oligonucleotide Microarray for the Study of Functional Gene Diversity in the Nitrogen Cycle in the Environment
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Optimization of Single-Base-Pair Mismatch Discrimination in Oligonucleotide Microarrays
resolves10.1093/nar/29.11.2303
Parallel multiplex thermodynamic analysis of coaxial base stacking in DNA duplexes by oligodeoxyribonucleotide microchips
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Phylogenetic Analysis of an Anaerobic, Trichlorobenzene-Transforming Microbial Consortium
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Bacterial community composition and function in sewage treatment systems
resolves10.1128/AEM.68.5.2535-2541.2002
High-Density Microarray of Small-Subunit Ribosomal DNA Probes
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Development and Evaluation of Functional Gene Arrays for Detection of Selected Genes in the Environment
resolves10.1016/S1369-5274(03)00052-3
Microarrays for bacterial detection and microbial community analysis
The 6 references without a DOI — listed, not checked
no DOI — not checkedAmann, R., and K.-H. Schleifer. 2001. Nucleic acid probes and their application in environmental microbiology, p. 67-82. In G. M. Garrity (ed.), Bergey's manual of systematic bacteriology, 2nd ed., vol. 1. Springer, New York, N.Y.
no DOI — not checkedAdvanced methods in molecular microbial ecology
no DOI — not checkedGarrity, G. M., and J. G. Holt. 2001. The road map to the manual, p. 119-166. In G. M. Garrity (ed.), Bergey's manual of systematic bacteriology, 2nd ed., vol. 1. Springer, New York, N.Y.
no DOI — not checkedThe prokaryotes: an evolving electronic resource for the microbiological community 3rd ed. 2003
no DOI — not checkedLoy A. 2003. DNA microarray technology for biodiversity inventories of sulfate-reducing prokaryotes. Ph.D. thesis. (http://tumb1.biblio.tu-muenchen.de/publ/diss/ww/2003/loy.pdf .) Technische Universität München Munich Germany.
no DOI — not checkedStahl, D. A., and R. Amann. 1991. Development and application of nucleic acid probes, p. 205-248. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley & Sons Ltd., Chichester, England.
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