Every reference with a DOI in the deposited reference list resolved to a known
work in Crossref or DataCite at the dated check, and none carried a retraction,
withdrawal, or removal notice.
The 63 checked references that resolve
resolves10.1099/mgen.0.000043Polysaccharide utilization loci and nutritional specialization in a dominant group of butyrate-producing human colonic Firmicutes
resolves10.1038/ismej.2017.196Specific substrate-driven changes in human faecal microbiota composition contrast with functional redundancy in short-chain fatty acid production
resolves10.1039/c8np00009cEcology and evolution of metabolic cross-feeding interactions in bacteria
resolves10.1016/j.chom.2013.12.007Human Gut Microbes Use Multiple Transporters to Distinguish Vitamin B12 Analogs and Compete in the Gut
resolves10.1128/mBio.00770-17Microbial Metabolic Networks at the Mucus Layer Lead to Diet-Independent Butyrate and Vitamin B
<sub>12</sub>
Production by Intestinal Symbionts
resolves10.1038/ismej.2017.2Underlying mechanisms for syntrophic metabolism of essential enzyme cofactors in microbial communities
resolves10.3389/fgene.2015.00148Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes
resolves10.3389/fmicb.2016.00128Genomic Analysis of the Human Gut Microbiome Suggests Novel Enzymes Involved in Quinone Biosynthesis
resolves10.1128/JB.01780-14Functional Metabolic Map of Faecalibacterium prausnitzii, a Beneficial Human Gut Microbe
resolves10.1038/ismej.2012.5The gut anaerobe<i>Faecalibacterium prausnitzii</i>uses an extracellular electron shuttle to grow at oxic–anoxic interphases
resolves10.1089/ars.2012.4701How Can
<i>Faecalibacterium prausnitzii</i>
Employ Riboflavin for Extracellular Electron Transfer?
resolves10.2741/3820Amino acid metabolism in intestinal bacteria: links between gut ecology and host health
resolves10.1186/1471-2180-13-6Ammonia production by human faecal bacteria, and the enumeration, isolation and characterization of bacteria capable of growth on peptides and amino acids
resolves10.3390/nu7042930The Role of Microbial Amino Acid Metabolism in Host Metabolism
resolves10.1042/bj1210431The biosynthesis of valine from isobutyrate by <i>Peptostreptococcus elsdenii</i> and <i>Bacteroides ruminicola</i>
resolves10.1128/AEM.48.6.1111-1117.1984Alternative pathways for biosynthesis of leucine and other amino acids in Bacteroides ruminicola and Bacteroides fragilis
resolves10.1128/AEM.64.8.2836-2843.1998De Novo Synthesis of Amino Acids by the Ruminal Bacteria
<i>Prevotella bryantii</i>
B
<sub>1</sub>
4,
<i>Selenomonas ruminantium</i>
HD4, and
<i>Streptococcus bovis</i>
ES1
resolves10.3945/jn.109.104380Products of the Colonic Microbiota Mediate the Effects of Diet on Colon Cancer Risk ,
resolves10.1006/anae.1997.0125Degradation and Utilization of Xylans by the Rumen AnaerobePrevotella bryantii(formerlyP. ruminicolasubsp.brevis) B14
resolves10.1152/ajpgi.00231.2013Recent advances in transport of water-soluble vitamins in organs of the digestive system: a focus on the colon and the pancreas
resolves10.1128/JB.187.22.7639-7646.2005Functional Analysis of All Aminotransferase Proteins Inferred from the Genome Sequence of<i>Corynebacterium glutamicum</i>
resolves10.1038/ejcn.2016.119The prebiotic concept and human health: a changing landscape with riboflavin as a novel prebiotic candidate?
resolves10.3390/nu11030613Dietary Nutrients Involved in One-Carbon Metabolism and Colonic Mucosa-Associated Gut Microbiome in Individuals with an Endoscopically Normal Colon
resolves10.1002/pro.2156The enzymes of biotin dependent CO<sub>2</sub> metabolism: What structures reveal about their reaction mechanisms
resolves10.1038/s41396-018-0304-9Uneven distribution of cobamide biosynthesis and dependence in bacteria predicted by comparative genomics
resolves10.7554/eLife.37090Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community
resolves10.15252/msb.20178157Deciphering microbial interactions in synthetic human gut microbiome communities
resolves10.1128/mBio.01068-17Reciprocal Prioritization to Dietary Glycans by Gut Bacteria in a Competitive Environment Promotes Stable Coexistence
resolves10.1093/nar/gkw1017Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
resolves10.1099/00207713-52-6-2141Growth requirements and fermentation products of Fusobacterium prausnitzii, and a proposal to reclassify it as Faecalibacterium prausnitzii gen. nov., comb. nov.
resolves10.1093/nar/gkt1244Ribosomal Database Project: data and tools for high throughput rRNA analysis
resolves10.1111/1462-2920.14977β‐Glucan is a major growth substrate for human gut bacteria related to
<scp>
<i>Coprococcus eutactus</i>
</scp>
The 4 references without a DOI — listed, not checked
no DOI — not checkedMadigan MT, Martinko JM, Bender KS, Buckley DH, Stahl DA (ed). 2015. Brock biology of microorganisms, 14th ed. Pearson Education Limited, Harlow, Essex, United Kingdom.
no DOI — not checkedMadden T. 2013. The BLAST sequence analysis tool. In The NCBI handbook 2nd ed. National Center for Biotechnology Information Bethesda MD. https://www.ncbi.nlm.nih.gov/books/NBK153387/.
no DOI — not checkedda Silva N, Taniwaki MH, Junqueira VCA, Silveira NFA, do Nascimento MS, Gomes RAR (ed). 2013. Microbiological examination methods of food and water: a laboratory manual. CRC Press/Balkema, Taylor & Francis Group, London, United Kingdom.
no DOI — not checkedPirt SJ. 1975. Principles of microbe and cell cultivation. Blackwell Scientific Publication, London, United Kingdom.
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