Every reference with a DOI in the deposited reference list resolved to a known
work in Crossref or DataCite at the dated check, and none carried a retraction,
withdrawal, or removal notice.
The 113 checked references that resolve
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resolves10.1038/nsmb.2859Structure of the mammalian 80S initiation complex with initiation factor 5B on HCV-IRES RNA
resolves10.1073/pnas.1414678111Functional conservation despite structural divergence in ligand-responsive RNA switches
resolves10.1038/nrmicro1558Structural and mechanistic insights into hepatitis C viral translation initiation
resolves10.1021/jm401312nHepatitis C Virus Translation Inhibitors Targeting the Internal Ribosomal Entry Site
resolves10.1002/wrna.1268Understanding the potential of hepatitis C virus internal ribosome entry site domains to modulate translation initiation via their structure and function
resolves10.1038/nrmicro3288Functional long-range RNA–RNA interactions in positive-strand RNA viruses
resolves10.1128/JVI.02677-14Overlapping Local and Long-Range RNA-RNA Interactions Modulate Dengue Virus Genome Cyclization and Replication
resolves10.1073/pnas.88.3.683Structural analysis of the interaction between the human immunodeficiency virus Rev protein and the Rev response element.
resolves10.1016/j.virol.2008.06.034The capsid-coding region hairpin element (cHP) is a critical determinant of dengue virus and West Nile virus RNA synthesis
resolves10.1016/j.virol.2012.06.028A novel coding-region RNA element modulates infectious dengue virus particle production in both mammalian and mosquito cells and regulates viral replication in Aedes aegypti mosquitoes
resolves10.1128/JVI.00243-13Novel
<i>cis</i>
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resolves10.7554/eLife.17636Viral RNA switch mediates the dynamic control of flavivirus replicase recruitment by genome cyclization
resolves10.1038/nmeth.3029RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP)
resolves10.1038/nprot.2015.103Selective 2′-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysis
resolves10.1073/pnas.1106501108Multiplexed RNA structure characterization with selective 2′-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)
resolves10.1093/nar/gku909SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing
resolves10.1016/j.molcel.2016.04.028In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation
resolves10.1021/ja043822vRNA Structure Analysis at Single Nucleotide Resolution by Selective 2‘-Hydroxyl Acylation and Primer Extension (SHAPE)
resolves10.1261/rna.036327.112QuShape: Rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis
resolves10.3389/fmicb.2017.02634Probing the Structures of Viral RNA Regulatory Elements with SHAPE and Related Methodologies
resolves10.1093/nar/gku815Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution
resolves10.1073/pnas.1600008113SHAPE reveals transcript-wide interactions, complex structural domains, and protein interactions across the
<i>Xist</i>
lncRNA in living cells
resolves10.1042/BCJ20160651Secondary structure model of the naked segment 7 influenza A virus genomic RNA
resolves10.1016/j.chom.2018.10.011Integrative Analysis of Zika Virus Genome RNA Structure Reveals Critical Determinants of Viral Infectivity
resolves10.1093/nar/gky012Structural divergence creates new functional features in alphavirus genomes
resolves10.1371/journal.ppat.1003294Comparison of SIV and HIV-1 Genomic RNA Structures Reveals Impact of Sequence Evolution on Conserved and Non-Conserved Structural Motifs
resolves10.1128/JVI.01560-13Global RNA Structure Analysis of Poliovirus Identifies a Conserved RNA Structure Involved in Viral Replication and Infectivity
resolves10.1021/acs.biochem.6b01166Packaged and Free Satellite Tobacco Mosaic Virus (STMV) RNA Genomes Adopt Distinct Conformational States
resolves10.1093/nar/gkx1273Probing of RNA structures in a positive sense RNA virus reveals selection pressures for structural elements
resolves10.1093/nar/gkx241Kaposi's sarcoma-associated herpesvirus polyadenylated nuclear RNA: a structural scaffold for nuclear, cytoplasmic and viral proteins
resolves10.1261/rna.2594011HCV IRES domain IIb affects the configuration of coding RNA in the 40S subunit's decoding groove
resolves10.1093/nar/gks927The folding of the hepatitis C virus internal ribosome entry site depends on the 3′-end of the viral genome
resolves10.1021/ja502754fIdentification of Biologically Active, HIV TAR RNA-Binding Small Molecules Using Small Molecule Microarrays
resolves10.1021/acs.jmedchem.6b01450Development of Small Molecules with a Noncanonical Binding Mode to HIV-1 Trans Activation Response (TAR) RNA
resolves10.1017/S1355838202020617Activation and evasion of the antiviral 2???-5??? oligoadenylate synthetase/ribonuclease L pathway by hepatitis C virus mRNA
resolves10.1261/rna.7150804Activation of the protein kinase PKR by short double-stranded RNAs with single-stranded tails
resolves10.1126/science.6165080Interferon Action: RNA Cleavage Pattern of a (2′-5′)Oligoadenylate—Dependent Endonuclease
resolves10.1089/jir.2004.24.664Sensitivity of Hepatitis C Virus RNA to the Antiviral Enzyme Ribonuclease L Is Determined by a Subset of Efficient Cleavage Sites
resolves10.1128/JVI.78.10.4953-4964.2004Changes of the Secondary Structure of the 5′ End of the Sindbis Virus Genome Inhibit Virus Growth in Mosquito Cells and Lead to Accumulation of Adaptive Mutations
resolves10.1128/JVI.00644-11Conservation of a Packaging Signal and the Viral Genome RNA Packaging Mechanism in Alphavirus Evolution
resolves10.1080/15476286.2016.1208331Computational and molecular analysis of conserved influenza A virus RNA secondary structures involved in infectious virion production
resolves10.4161/rna.29730RNA structural constraints in the evolution of the influenza A virus genome NP segment
resolves10.1128/JVI.01078-08Bioinformatic and Physical Characterizations of Genome-Scale Ordered RNA Structure in Mammalian RNA Viruses
resolves10.1261/rna.047506.114Visualizing the global secondary structure of a viral RNA genome with cryo-electron microscopy
resolves10.1128/JVI.00436-06Compensatory Capsid Protein Mutations in Cucumber Mosaic Virus Confer Systemic Infectivity in Squash (
<i>Cucurbita pepo</i>
)
resolves10.1093/nar/gkh839A comparative method for finding and folding RNA secondary structures within protein-coding regions
resolves10.1073/pnas.0401799101Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
resolves10.1261/rna.7650904Using an RNA secondary structure partition function to determine confidence in base pairs predicted by free energy minimization
resolves10.1186/1471-2105-12-3R2R - software to speed the depiction of aesthetic consensus RNA secondary structures
resolves10.1261/rna.043323.113RNA secondary structure modeling at consistent high accuracy using differential SHAPE
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