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Morphological description and DNA barcoding of Hydrobaenus laticaudus Sæther, 1976 (Diptera: Chironomidae: Orthocladiinae) from Amur River basin (Russian Far East)

https://doi.org/10.11646/zootaxa.4674.2.4

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no DOI — not checkedAshe, P. & O’Connor, J.P. (2012) A World Catalogue of Chironomidae (Diptera) Part 2. Orthocladiinae. Irish Biogeographical Society & National Museum of Ireland, Dublin. 500 pp. [pp. 469–968]Cranston, P.S., Hardy, N.B. & Morse, G.E. (2012) A dated molecular phylogeny for the Chironomidae (Diptera). Systematic Entomology, 37, 172–188. https://doi.org/10.1111/j.1365-3113.2011.00603.xEdgar, R.C. (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792–1797. https://doi.org/10.1093/nar/gkh340Ekrem, T., Stur, E. & Hebert, P.D.N. (2010) Females do count: Documenting Chironomidae (Diptera) species diversity using DNA barcoding. Organisms Diversity Evolution, 10, 397. https://doi.org/10.1007/s13127-010-0034-yEkrem, T., Stur, E., Orton, M.G. & Adamowicz, S.J. (2018) DNA barcode data reveal biogeographic trends in Arctic non-biting midges. Genome, 61 (11), 787–796. https://doi.org/10.1139/gen-2018-0100Felsenstein, J. (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution, 17 (6), 368–376. https://doi.org/10.1007/BF01734359Folmer, O., Black, M., Hoeh, W., Lutz, R. & Vrijenhoek, R. (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology, 3, 294–299.Hebert, P., Cywinska, A., Ball, S. & DeWaard, J. (2003) Biological identifications through DNA barcodes. Proceedings of the Royal Society of London, B: Biological Sciences, 270, 313–321. https://doi.org/10.1098/rspb.2002.2218Hebert, P.D.N., Ratnasingham, S., Zakharov E.V., Telfer, A.C., Levesque., B.V., Milton, M.A., Pedersen, S., Jannetta, P. & deWaard, J.R. (2016) Counting animal species with DNA barcodes: Canadian insects. Philosophical Transactions of The Royal Society, B: Biological Sciences, 371, 1–10. https://doi.org/10.1098/rstb.2015.0333Kumar, S., Stecher, G. & Tamura, K. (2016) MEGA7: Molecular Evolutionary Genetics Analysis version 7.0 for bigger datasets. Molecular Biology and Evolution, 33 (7), 1870–1874. https://doi.org/10.1093/molbev/msw054Lanfear, R., Calcott, B., Ho, S.Y. & Guindon, S. (2012) Partitionfinder: combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution, 29 (6), 1695–1701. https://doi.org/10.1093/molbev/mss020Makarchenko, E.A. (1985) Chironomids of the Soviet Far East. Subfamilies Podonominae, Diamesinae and Prodiamesinae (Diptera, Chironomidae). DVNC AN SSSR Press, Vladivostok, 208 pp. [in Russian]Makarchenko, E.A., Makarchenko, M.A. & Yavorskaya, N.M. (2009) New records of chironomids (Diptera, Chironomidae, Orthocladiinae) in Far East and bordering territories. VI. Hydrobaenus Fries. Euroasian Entomological Journal, 8 (Supplement 1), 33–50. [in Russian]Makarchenko, E.A. & Makarchenko, M.A. (2014) On taxonomy of Hydrobaenus Fries, 1830 (Diptera: Chironomidae: Orthocladiinae) from the Russian Far East, with a key to species. Zootaxa, 3760 (3), 429–438. https://doi.org/10.11646/zootaxa.3760.3.9Makarchenko, E.A., Makarchenko, M.A. & Semenchenko, A.A. (2015) Morphological description and DNA barcoding of Hydrobaenus majus sp. nov. (Diptera: Chironomidae: Orthocladiinae) from the Russian Far East. Zootaxa, 4000 (2), 287–293. https://doi.org/10.11646/zootaxa.4000.2.7Makarchenko, E.A., Makarchenko, M.A. & Semenchenko, A.A. (2017a) New or little-known species of Chaetocladius s. str. Kieffer, 1911 (Diptera: Chironomidae: Orthocladiinae) from the Amur River basin (Russian Far East). Zootaxa, 4247 (3), 313–330. https://doi.org/10.11646/zootaxa.4247.3.5Makarchenko, E.A., Makarchenko, M.A., Semenchenko, A.A. & Veliaev, O.A. (2017b) Morphological description and DNA barcoding of Hydrobaenus golovinensis sp. nov. (Diptera: Chironomidae: Orthocladiinae) from the Russian Far East. Zootaxa, 4286 (2), 277–284. https://doi.org/10.11646/zootaxa.4286.2.10Montagna, M., Mereghetti, V., Lencioni, V. & Rossaro, B. (2016) Integrated Taxonomy and DNA Barcoding of Alpine Midges (Diptera: Chironomidae). PLoS ONE, 11 (3), e0149673. https://doi.org/10.1371/journal.pone.0149673Puillandre, N., Lambert, A., Brouillet, S. & Achaz, G. (2012) ABGD, Automatic Barcode Gap Discovery for primary species delimitation. Molecular Ecology, 21 (8), 1864–1877. https://doi.org/10.1111/j.1365-294X.2011.05239.xRambaut, A, Drummond, A.J., Xie, D., Baele, G. & Suchard, M.A. (2018) Posterior summarisation in Bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67 (5), 901–904. https://doi.org/10.1093/sysbio/syy032Ronquist, F. & Huelsenbeck, J.P. (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572–1574. https://doi.org/10.1093/bioinformatics/btg180Sæther, O.A. (1976) Revision of Hydrobaenus, Trissocladius, Zalutschia, Paratrissocladius, and some related genera (Diptera, Chironomidae). Bulletin of the Fisheries Research Board of Canada, 195, 1–287.Sæther, O.A. (1980) Glossary of chironomid morphology terminology (Chironomidae, Diptera). Entomologica scandinavica, 14 (Supplement), 1–51.Silva, F.L. & Wiedenbrug, S. (2014) Integrating DNA barcodes and morphology for species delimitation in the Corynoneura group (Diptera: Chironomidae: Orthocladiinae). Bulletin of Entomological Research, 104 (1), 65–78. https://doi.org/10.1017/S0007485313000515Song, C., Lin, X.-L., Wang, Q. & Wang, X.-H. (2018) DNA barcodes successfully delimit morphospecies in a superdiverse insect genus. Zoologica Scripta, 47 (3), 311–324. https://doi.org/10.1111/zsc.12284Tavaré, S. (1986) Some Probabilistic and Statistical Problems in the Analysis of DNA Sequences (PDF). Lectures on Mathematics in the Life Sciences. American Mathematical Society, 17, 57–86.Wirta, H., Varkonyi, G., Rasmussen, C., Kaartinen, R., Schmidt, N.M., Hebert, P.D.N., Bartak, M., Blagoev, G., Disney, H., Ertl, S., Gjelstrup, P., Gwiazdowicz, D.J., Hulden, L., Ilmonen, J., Jakovlev, J., Jaschhof, M., Kahanpaa, J., Kankaanpaa, T., Krogh, P.H., Labbee, R., Lettner, C., Michelsen, V., Nielsen, S.A., Nielsen, T.R., Paasivirta, L., Pedersen, S., Pohjoismaki, J., Salmela, J., Vilkamaa, P., Vare, H., von Tschirnhaus, M. & Roslin, T. (2016) Establishing a community-wide DNA barcode library as a new tool for arctic research. Molecular ecology resources, 16, 809–822. https://doi.org/10.1111/1755-0998.12489Zharkikh, A.J. (1994) Estimation of evolutionary distances between nucleotide sequences. Molecular Evolution, 39, 315. https://doi.org/10.1007/BF00160155

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