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Can DNA barcoding be used to identify closely related Clunio Haliday, 1855 species (Diptera: Chironomidae, Orthocladiinae)?

https://doi.org/10.11646/zootaxa.4927.1.1
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12/12 checkable references clean · checked 2026-07-22

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

13 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

The 12 checked references that resolve
resolves10.1016/j.ympev.2006.11.021
A comprehensive DNA sequence library is essential for identification with DNA barcodes
resolves10.1371/journal.pone.0002490
Identifying Canadian Freshwater Fishes through DNA Barcodes
resolves10.1111/j.1479-8298.2011.00449.x
Current progress in DNA barcoding and future implications for entomology
resolves10.1111/j.1365-294X.2010.04706.x
Strong genetic differentiation and postglacial origin of populations in the marine midge Clunio marinus (Chironomidae, Diptera)
resolves10.1038/nature20151
The genomic basis of circadian and circalunar timing adaptations in a midge
resolves10.1093/nar/gkv279
The EMBL-EBI bioinformatics web and programmatic tools framework
resolves10.1371/journal.pone.0138993
Exploring Genetic Divergence in a Species-Rich Insect Genus Using 2790 DNA Barcodes
resolves10.1371/journal.pone.0159124
Correction: Integrated Taxonomy and DNA Barcoding of Alpine Midges (Diptera: Chironomidae)
resolves10.5324/cjcr.v0i32.3078
Clunio boudouresquei sp. n. and Thalassosmittia ballestai sp. n., two Tyrrhenian marine species occurring in Scandola Nature Reserve, West Corsica (Diptera: Chironomidae)
resolves10.11646/zootaxa.4822.2.4
Description of the adult and larva of Clunio balticus Heimbach, 1978 (Diptera, Chironomidae) from the seashore of Bergen (Norway)
resolves10.5324/cjcr.v0i33.3332
Description of the adult and immature stages of Clunio ponticus Michailova, 1980 (Diptera, Chironomidae), from the Black Sea, Varna, Bulgaria
resolves10.1371/journal.pone.0174842
The marker choice: Unexpected resolving power of an unexplored CO1 region for layered DNA barcoding approaches
The 13 references without a DOI — listed, not checked
no DOI — not checked<p class="Reference">Caspers, H. (1951) Rhythmische Erscheinung in der Fortplanzung von <em>Clunio marinus</em> (Diptera, Chironomidae) und das Problem der lunaren Periodizität bei Organismen. <em>Archiv fur Hydrobiologie</em>, Supplement 18, 418-575.</p><p class="Reference">Ekrem, T., Willassen, E &amp
no DOI — not checkedVrijenhoek, R.C. (1994) Conserved primers for PCR amplification of mitochondrial DNA from different invertebrate phyla. <em>Molecular Marine Biology and Biotechnology,</em> 3, 294-299.</p><p class="Reference">Fuhrmann, N. &amp
no DOI — not checkedKaiser, T. (2020) The importance of DNA barcode choice in biogeographic analyses a case study on marine midges of the genus <em>Clunio</em>. <em>Genome</em>, 8, 1-11.</p><p class="Reference"> <a href="https://doi.org/10.1139/gen-2019-0191">https://doi.org/10.1139/gen-2019-0191</a></p><p class="Reference">Hashimoto, H. (1975) Seasonal Emergence of <em>Clunio aquilonius</em> Tokunaga (Diptera, Chironomidae). <em>Entomological Society of Japan,</em> 43, 1, 49 - 54.</p><p class="Reference">Hebert, P., Cywinska, A., Shelley, L. Ball, S.T. &amp
no DOI — not checkedde Waard, J.R. (2003) Biological identifications through DNA barcodes.<em> Proceedings</em> <em>of the Royal Society London B: Biological Sciences</em>, 270, 313-321.</p><p class="Reference"> <a href="https://doi.org/10.1098/rspb.2002.2218">https://doi.org/10.1098/rspb.2002.2218</a></p><p class="Reference">Heimbach, F. (1978) Sympatric species, <em>Clunio marinus</em> Hal. and <em>C</em>. <em>balticus </em>n. sp. (Dipt., Chironomidae), isolated by differences in diel emergence time. <em>Oecologia</em>,<em> </em>32, 195-202.</p><p class="Reference"> <a href="https://doi.org/10.1007/BF00366071">https://doi.org/10.1007/BF00366071</a></p><p class="Reference">Hubert, N., Hanner, R., Holm, E., Mandrak, N.E., Taylor, E., Burridge, M. &amp
no DOI — not checkedErickson, D.L. (2015) DNA barcodes for ecology, evolution and conservation. <em>Trends in ecology</em> &amp
no DOI — not checkedRossaro, B. (2007) I Ditteri Chironomidi morfologia, tassonomia, ecologia, fisiologia e zoogeografia. Science Museum of Trento (Ed.), <em>Quaderni del Museo Tridentino di Scienze Naturali. Vol. 1</em>. Esperia, Lavis, Trento, pp. 1-172.</p><p class="Reference">Li, W., Cowley, A., Uludag, M., Gur, T., McWilliam, H., Squizzato, S. &amp
no DOI — not checkedPalatov, D.M. (2018) New data on taxonomy and systematics of the genus <em>Diamesa </em>Meigen (Diptera: Chironomidae: Diamesinae) from Tien Shan and Pamir mountains, with description of two new species. <em>Journal of Limnology</em>, 77, 50-58.</p><p class="Reference"> <a href="https://doi.org/10.4081/jlimnol.2018.1783">https://doi.org/10.4081/jlimnol.2018.1783</a></p><p class="Reference">McWilliam, H., Li, W., Uludag, M., Squizzato, S., Park, Y.M., Buso, N. &amp
no DOI — not checkedLopez, R. (2013) Analysis tool web services from the EMBL-EBI. <em>Nucleic Acids Research</em>, 41<em> </em>(W1), 597-600.</p><p class="Reference"> <a href="https://doi.org/10.1093/nar/gkt376">https://doi.org/10.1093/nar/gkt376</a></p><p class="Reference">Michailova, P. (1980) A review of the European species of genus <em>Clunio</em> Haliday, 1855 (Diptera, Chironomidae). <em>Zoologischer Anzeiger</em>, 205 (5/6), 417-432.</p><p class="Reference">Montagna, M., Mereghetti, V., Lencioni, V. &amp
no DOI — not checkedVences, M. (2012) First large-scale DNA barcoding assessment of reptiles in the biodiversity hotspot of Madagascar, based on newly designed COI primers. <em>PLoS ONE</em>, 7 (3), e34506.</p><p class="Reference"> <a href="https://doi.org/10.1371/journal.pone.0034506">https://doi.org/10.1371/journal.pone.0034506</a></p><p class="Reference">Neumann, D. (1976) Adaptation of chironomids to intertidal environments. <em>Annual Review of Entomology</em>, 21, 387-414.</p><p class="Reference"> <a href="https://doi.org/10.1146/annurev.en.21.010176.002131">https://doi.org/10.1146/annurev.en.21.010176.002131</a></p><p class="Reference">Rach, J., Bergman,T., Paknia,O., DeSalle, R., Schierwate, B. &amp
no DOI — not checkedLi, W. (2011) Fast, scalable 1247 generation of high-quality protein multiple sequence alignments using Clustal Omega<em>. Molecular Systems Biology</em>, 7, 539. [Epub 2011/10/13]</p><p class="Reference"> <a href="https://doi.org/10.1038/msb.2011.75">https://doi.org/10.1038/msb.2011.75</a></p><p class="Reference">Strenzke, K. (1960) Metamorphose und verwadtschaftsbeziehungen der gattung <em>Clunio</em> Hal. (Dipt.). Terrestrische Chironomidae XXIV. <em>Annales Zoologigi Societatis Zoologigae Botanicae Fennicae 'Vasamo'</em>, 22, 4, 1-30.</p><p class="Reference">Tahir, H.M. &amp
no DOI — not checkedAkhtar, S. (2015) Services of DNA barcoding in different fields. <em>Mitochondrial DNA</em>, 27 (6) 4463-4474.</p><p class="Reference"> <a href="https://doi.org/10.3109/19401736.2015.1089572">https://doi.org/10.3109/19401736.2015.1089572</a></p><p class="Reference">Ward, R.D. (2009) DNA barcode divergence among species and genera of birds and fishes. <em>Molecular Ecology Resources</em>, 9, 1077-1085.</p><p class="Reference"> <a href="https://doi.org/10.1111/j.1755-0998.2009.02541.x">https://doi.org/10.1111/j.1755-0998.2009.02541.x</a></p><p> </p>
no DOI — not checked<p class="Reference">Caspers, H. (1951) Rhythmische Erscheinung in der Fortplanzung von <em>Clunio marinus</em> (Diptera, Chironomidae) und das Problem der lunaren Periodizität bei Organismen. <em>Archiv fur Hydrobiologie</em>, Supplement 18, 418-575.</p><p class="Reference">Ekrem, T., Willassen, E &amp; Stur, E. (2007) A comprehensive DNA sequence library is essential for identification with DNA barcodes. <em>Molecular Phylogenetics and Evolution</em>, 43, 530- 542.</p><p class="Reference"> <a href="https://doi.org/10.1016/j.ympev.2006.11.021">https://doi.org/10.1016/j.ympev.2006.11.021</a></p><p class="Reference">Folmer, O., Hoeh, W.R., Black, M.B. &amp; Vrijenhoek, R.C. (1994) Conserved primers for PCR amplification of mitochondrial DNA from different invertebrate phyla. <em>Molecular Marine Biology and Biotechnology,</em> 3, 294-299.</p><p class="Reference">Fuhrmann, N. &amp; Kaiser, T. (2020) The importance of DNA barcode choice in biogeographic analyses a case study on marine midges of the genus <em>Clunio</em>. <em>Genome</em>, 8, 1-11.</p><p class="Reference"> <a href="https://doi.org/10.1139/gen-2019-0191">https://doi.org/10.1139/gen-2019-0191</a></p><p class="Reference">Hashimoto, H. (1975) Seasonal Emergence of <em>Clunio aquilonius</em> Tokunaga (Diptera, Chironomidae). <em>Entomological Society of Japan,</em> 43, 1, 49 - 54.</p><p class="Reference">Hebert, P., Cywinska, A., Shelley, L. Ball, S.T. &amp; de Waard, J.R. (2003) Biological identifications through DNA barcodes.<em> Proceedings</em> <em>of the Royal Society London B: Biological Sciences</em>, 270, 313-321.</p><p class="Reference"> <a href="https://doi.org/10.1098/rspb.2002.2218">https://doi.org/10.1098/rspb.2002.2218</a></p><p class="Reference">Heimbach, F. (1978) Sympatric species, <em>Clunio marinus</em> Hal. and <em>C</em>. <em>balticus </em>n. sp. (Dipt., Chironomidae), isolated by differences in diel emergence time. <em>Oecologia</em>,<em> </em>32, 195-202.</p><p class="Reference"> <a href="https://doi.org/10.1007/BF00366071">https://doi.org/10.1007/BF00366071</a></p><p class="Reference">Hubert, N., Hanner, R., Holm, E., Mandrak, N.E., Taylor, E., Burridge, M. &amp; Watkinson, D. (2008) Identifying Canadian freshwater fishes through DNA barcodes. <em>PLoS ONE</em>, 3, e2490.</p><p class="Reference"> <a href="https://doi.org/10.1371/journal.pone.0002490">https://doi.org/10.1371/journal.pone.0002490</a></p><p class="Reference">Jimbo, U., Kato, T. &amp; Ito, M. (2011) Current progress in DNA barcoding and future implications for entomology. <em>Entomological Science</em>, 14 (2), 107-124.</p><p class="Reference"> <a href="https://doi.org/10.1111/j.1479-8298.2011.00449.x">https://doi.org/10.1111/j.1479-8298.2011.00449.x</a></p><p class="Reference">Kaiser, T., Neumann, D., Heckel, D. &amp; Berndonk, Th. (2010) Strong genetic differentiation and postglacial origin of populations in the marine midge <em>Clunio marinus</em> (Chironomidae, Diptera). <em>Molecular Ecology</em>, 19, 2845-2857.</p><p class="Reference"> <a href="https://doi.org/10.1111/j.1365-294X.2010.04706.x">https://doi.org/10.1111/j.1365-294X.2010.04706.x</a></p><p class="Reference">Kaiser, T., Poehn, B., Szkiba, D., Preussner, M., Sedlazeck, F., Zrim, A., Neumann, T., Nguyen, L.-T., Betancourt, A., Hummel, Th.,Vogel, H., Dorner, S., Heyd, F., Haeseler, A. &amp; Raible, K.T. (2016) The genomic basis of circadian and circa-lunar timing adaptations in a midge. <em>Nature</em>, 540 (7631), 69-73.</p><p class="Reference"> <a href="https://doi.org/10.1038/nature20151">https://doi.org/10.1038/nature20151</a></p><p class="Reference">Kress, W.J., Garca-Robledo, C., Uriarte, M. &amp; Erickson, D.L. (2015) DNA barcodes for ecology, evolution and conservation. <em>Trends in ecology</em> &amp; <em>evolution</em>, 30, 1, 25-35.</p><p class="Reference"> <a href="https://doi.org/10.1016/j.tree.2014.10.008">https://doi.org/10.1016/j.tree.2014.10.008</a></p><p class="Reference">Lencioni, V., Marziali, L. &amp; Rossaro, B. (2007) I Ditteri Chironomidi morfologia, tassonomia, ecologia, fisiologia e zoogeografia. Science Museum of Trento (Ed.), <em>Quaderni del Museo Tridentino di Scienze Naturali. Vol. 1</em>. Esperia, Lavis, Trento, pp. 1-172.</p><p class="Reference">Li, W., Cowley, A., Uludag, M., Gur, T., McWilliam, H., Squizzato, S. &amp; Lopez, R. (2015) The EMBL-EBI bioinformatics web and programmatic tools framework. <em>Nucleic Acids Research</em>, 43<em> </em>(W1), 580-584.</p><p class="Reference"> <a href="https://doi.org/10.1093/nar/gkv279">https://doi.org/10.1093/nar/gkv279</a></p><p class="Reference">Lin, X., Stur, E. &amp; Ekrem, T. (2015) Exploring Genetic Divergence in a Species-Rich Insect Genus Using 2790 DNA. <em>PLoS ONE</em>, 10 (9), e0138993.</p><p class="Reference"> <a href="https://doi.org/10.1371/journal.pone.0138993">https://doi.org/10.1371/journal.pone.0138993</a></p><p class="Reference">Makarchenko, E.A., Semenchenko, A.A. &amp; Palatov, D.M. (2018) New data on taxonomy and systematics of the genus <em>Diamesa </em>Meigen (Diptera: Chironomidae: Diamesinae) from Tien Shan and Pamir mountains, with description of two new species. <em>Journal of Limnology</em>, 77, 50-58.</p><p class="Reference"> <a href="https://doi.org/10.4081/jlimnol.2018.1783">https://doi.org/10.4081/jlimnol.2018.1783</a></p><p class="Reference">McWilliam, H., Li, W., Uludag, M., Squizzato, S., Park, Y.M., Buso, N. &amp; Lopez, R. (2013) Analysis tool web services from the EMBL-EBI. <em>Nucleic Acids Research</em>, 41<em> </em>(W1), 597-600.</p><p class="Reference"> <a href="https://doi.org/10.1093/nar/gkt376">https://doi.org/10.1093/nar/gkt376</a></p><p class="Reference">Michailova, P. (1980) A review of the European species of genus <em>Clunio</em> Haliday, 1855 (Diptera, Chironomidae). <em>Zoologischer Anzeiger</em>, 205 (5/6), 417-432.</p><p class="Reference">Montagna, M., Mereghetti, V., Lencioni, V. &amp; Rossaro, B. (2016) Integrated Taxonomy and DNA Barcoding of Alpine Midges (Diptera: Chironomidae). <em>PLoS ONE</em>, 11, 1932-6203.</p><p class="Reference"> <a href="https://doi.org/10.1371/journal.pone.0159124">https://doi.org/10.1371/journal.pone.0159124</a></p><p class="Reference">Moubayed-Breil, J. &amp; Dominici, J.M. (2019) <em>Clunio boudouresquei </em>sp. n. and <em>Thalassosmittia ballestai </em>sp. n., two Tyrrhenian marine species occurring in Scandola Nature Reserve, West Corsica (Diptera, Chironomidae). <em>Chironomus Journal of Chironomidae Researches</em>, 32, 4-24.</p><p class="Reference">Moubayed-Breil, J. &amp; Michailova, P. (2020)<strong> </strong>Description of the adult and larva of <em>Clunio balticus </em>Heimbach, 1978 (Diptera, Chironomidae) from the seashore of Bergen (Norway)<strong>.</strong> <em>Zootaxa</em>, 4822 (2), 209-220.</p><p class="Reference"> <a href="https://doi.org/10.11646/zootaxa.4822.2.4">https://doi.org/10.11646/zootaxa.4822.2.4</a></p><p class="Reference">Moubayed-Breil, J., Michailova, P. &amp; Langton, P.H. (2020) Description of the adult and immature stages of <em>Clunio ponticus</em> Michailova, 1980 (Diptera, Chironomidae) from the Black Sea, Varna, Bulgaria. <em>Chironomus Journal of Chironomidae Researches</em>, 33, 31- 47.</p><p class="Reference"> <a href="https://doi.org/10.5324/cjcr.v0i33.3332">https://doi.org/10.5324/cjcr.v0i33.3332</a></p><p class="Reference">Nagy, T., Sonet, G., Glaw, F. &amp; Vences, M. (2012) First large-scale DNA barcoding assessment of reptiles in the biodiversity hotspot of Madagascar, based on newly designed COI primers. <em>PLoS ONE</em>, 7 (3), e34506.</p><p class="Reference"> <a href="https://doi.org/10.1371/journal.pone.0034506">https://doi.org/10.1371/journal.pone.0034506</a></p><p class="Reference">Neumann, D. (1976) Adaptation of chironomids to intertidal environments. <em>Annual Review of Entomology</em>, 21, 387-414.</p><p class="Reference"> <a href="https://doi.org/10.1146/annurev.en.21.010176.002131">https://doi.org/10.1146/annurev.en.21.010176.002131</a></p><p class="Reference">Rach, J., Bergman,T., Paknia,O., DeSalle, R., Schierwate, B. &amp; Hadrys, H. (2017) The marker choice: Unexpected resolving power of an unexplored CO1 region forlayered DNA barcoding approaches. <em>PLoS</em> <em>ONE</em>, 12 (4), e0174842.</p><p class="Reference"> <a href="https://doi.org/10.1371/journal.pone.0174842">https://doi.org/10.1371/journal.pone.0174842</a></p><p class="Reference">Sievers, F., Wilm, A., Dineen, D., Gibson, T. J., Karplus, K. &amp; Li, W. (2011) Fast, scalable 1247 generation of high-quality protein multiple sequence alignments using Clustal Omega<em>. Molecular Systems Biology</em>, 7, 539. [Epub 2011/10/13]</p><p class="Reference"> <a href="https://doi.org/10.1038/msb.2011.75">https://doi.org/10.1038/msb.2011.75</a></p><p class="Reference">Strenzke, K. (1960) Metamorphose und verwadtschaftsbeziehungen der gattung <em>Clunio</em> Hal. (Dipt.). Terrestrische Chironomidae XXIV. <em>Annales Zoologigi Societatis Zoologigae Botanicae Fennicae 'Vasamo'</em>, 22, 4, 1-30.</p><p class="Reference">Tahir, H.M. &amp; Akhtar, S. (2015) Services of DNA barcoding in different fields. <em>Mitochondrial DNA</em>, 27
no DOI — not checked(6) 4463-4474.</p><p class="Reference"> <a href="https://doi.org/10.3109/19401736.2015.1089572">https://doi.org/10.3109/19401736.2015.1089572</a></p><p class="Reference">Ward, R.D. (2009) DNA barcode divergence among species and genera of birds and fishes. <em>Molecular Ecology Resources</em>, 9, 1077-1085.</p><p class="Reference"> <a href="https://doi.org/10.1111/j.1755-0998.2009.02541.x">https://doi.org/10.1111/j.1755-0998.2009.02541.x</a></p><p> </p>
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