Reference health
Complete plastid genome sequence of Daucus carota: Implications for biotechnology and phylogeny of angiosperms
2 of 91 checkable references need attention · checked 2026-07-22
At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.
13 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
References needing attention
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does not resolve to a known work10.1111/j.1095-8339.2000.tb01588.x
The 89 checked references that resolve
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Proteomics, Bioinformatics and Genomics Applied to Plant Organelles
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Fine structural features of the chloroplast genome: comparison of the sequenced chloroplast genomes
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Physical studies on the size and structure of the covalently closed circular chloroplast DNA from higher plants
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Chloroplast DNA from higher plants replicates by both the Cairns and the rolling circle mechanism
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Characterization of Heterologous Multigene Operons in Transgenic Chloroplasts. Transcription, Processing, and Translation
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Phytoremediation of Organomercurial Compounds via Chloroplast Genetic Engineering
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Polyester synthesis in transplastomic tobacco (Nicotiana tabacum L.): significant contents of polyhydroxybutyrate are associated with growth reduction
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Overexpression of the Bt cry2Aa2 operon in chloroplasts leads to formation of insecticidal crystals
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Accumulation of trehalose within transgenic chloroplasts confers drought tolerance
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Enhanced translation of a chloroplast-expressed
<i>Rbc</i>
S gene restores small subunit levels and photosynthesis in nuclear
<i>Rbc</i>
S antisense plants
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Milestones in chloroplast genetic engineering: an environmentally friendly era in biotechnology
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Chloroplast expression of His-tagged GUS-fusions: a general strategy to overproduce and purify foreign proteins using transplastomic plants as bioreactors
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Expression of the native cholera toxin B subunit gene and assembly as functional oligomers in transgenic tobacco chloroplasts11Edited by N.-H. Chua
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The Inheritance of Genes in Mitochondria and Chloroplasts: Laws, Mechanisms, and Models
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Containment of herbicide resistance through genetic engineering of the chloroplast genome
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Low probability of chloroplast movement from oilseed rape (Brassica napus) into wild Brassica rapa
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Engineering Cytoplasmic Male Sterility via the Chloroplast Genome by Expression of <i>β</i>-Ketothiolase
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Engineering chloroplasts: an alternative site for foreign genes, proteins, reactions and products
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Chloroplast Genetic Engineering: Recent Advances and Future Perspectives
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Breakthrough in chloroplast genetic engineering of agronomically important crops
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Chloroplast-derived vaccine antigens and other therapeutic proteins
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Plastid-Expressed
<i>Betaine Aldehyde Dehydrogenase</i>
Gene in Carrot Cultured Cells, Roots, and Leaves Confers Enhanced Salt Tolerance
resolves10.1007/s11103-004-2907-y
Stable transformation of the cotton plastid genome and maternal inheritance of transgenes
resolves10.1186/1471-2148-6-32
Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids
resolves10.1186/1471-2164-7-61
The complete chloroplast genome sequence of Gossypium hirsutum: organization and phylogenetic relationships to other angiosperms
resolves10.1007/s00122-006-0254-x
Complete chloroplast genome sequences of Solanum bulbocastanum, Solanum lycopersicum and comparative analyses with other Solanaceae genomes
resolves10.1007/s00299-005-0097-y
Complete sequence and organization of the cucumber (Cucumis sativus L. cv. Baekmibaekdadagi) chloroplast genome
resolves10.1073/pnas.96.5.1840
Overexpression of the
<i>Bacillus thuringiensis</i>
(Bt) Cry2Aa2 protein in chloroplasts confers resistance to plants against susceptible and Bt-resistant insects
resolves10.1104/pp.010233
Expression of an Antimicrobial Peptide via the Chloroplast Genome to Control Phytopathogenic Bacteria and Fungi
resolves10.1016/S1360-1385(01)01922-7
Medical molecular farming: production of antibodies, biopharmaceuticals and edible vaccines in plants
resolves10.1046/j.1467-7652.2003.00008.x
A chloroplast transgenic approach to hyper‐express and purify Human Serum Albumin, a protein highly susceptible to proteolytic degradation
resolves10.1128/IAI.73.12.8266-8274.2005
Plant-Based Vaccine: Mice Immunized with Chloroplast-Derived Anthrax Protective Antigen Survive Anthrax Lethal Toxin Challenge
resolves10.1007/s11103-005-4477-z
Regulatory Sequences of Orthologous petD Chloroplast mRNAs are Highly Specific among Chlamydomonas Species
resolves10.1093/molbev/msg159
Analysis of the Amborella trichopoda Chloroplast Genome Sequence Suggests That Amborella Is Not a Basal Angiosperm
resolves10.1093/molbev/msh147
The Chloroplast Genome of Nymphaea alba: Whole-Genome Analyses and the Problem of Identifying the Most Basal Angiosperm
resolves10.1093/molbev/msi191
Identifying the Basal Angiosperm Node in Chloroplast Genome Phylogenies: Sampling One's Way Out of the Felsenstein Zone
resolves10.1093/molbev/msj029
The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with that of Grasses and Its Phylogenetic Implications
resolves10.1186/1471-2148-4-35
Long branch attraction, taxon sampling, and the earliest angiosperms: Amborella or monocots?
resolves10.1016/j.tplants.2005.03.007
Chloroplast genome phylogenetics: why we need independent approaches to plant molecular evolution
resolves10.1016/j.tplants.2004.08.008
Genome-scale data, angiosperm relationships, and ‘ending incongruence’: a cautionary tale in phylogenetics
resolves10.1016/S1016-8478(23)13143-8
Widespread Occurrence of Small Inversions in the Chloroplast Genomes of Land Plants
resolves10.1093/dnares/11.4.247
Complete Chloroplast Genome Sequences from Korean Ginseng (Panax schinseng Nees) and Comparative Analysis of Sequence Evolution among 17 Vascular Plants
resolves10.1016/S0168-9452(99)00254-X
Transgenic carrots with enhanced resistance against two major pathogens, Erysiphe heraclei and Alternaria dauci
resolves10.1002/ps.567
Transformation of carrots with mutant acetolactate synthase for <i>Orobanche</i> (broomrape) control
resolves10.1023/A:1009605729268
Transgenic plants expressing human glutamic acid decarboxylase (GAD65), a major autoantigen in insulin-dependent diabetes mellitus
resolves10.1038/nbt1098-934
A plant-based cholera toxin B subunit–insulin fusion protein protects against the development of autoimmune diabetes
resolves10.1128/IAI.73.9.5915-5922.2005
Highly Immunogenic and Protective Recombinant Vaccine Candidate Expressed in Transgenic Plants
resolves10.1016/j.vaccine.2004.11.011
Antibody processing and engineering in plants, and new strategies for vaccine production
resolves10.1023/A:1022354322226
Neutralizing immunogenicity of transgenic carrot (Daucus carota L.)-derived measles virus hemagglutinin
resolves10.1016/S0264-410X(02)00747-8
Neutralising immunogenicity of a polyepitope antigen expressed in a transgenic food plant: a novel antigen to protect against measles
resolves10.1016/j.imlet.2004.11.009
Mucosal adjuvants and anti-infection and anti-immunopathology vaccines based on cholera toxin, cholera toxin B subunit and CpG DNA
resolves10.1096/fj.05-5134fje
Receptor‐mediated oral delivery of a bioencapsulated green fluorescent protein expressed in transgenic chloroplasts into the mouse circulatory system
resolves10.1093/dnares/7.6.323
Complete Structure of the Chloroplast Genome of a Legume, Lotus japonicus
resolves10.1007/s00606-003-0056-4
The chloroplast genome of the ?basal? angiosperm Calycanthus fertilis ? structural and phylogenetic analyses
resolves10.1007/s11103-005-8882-0
Complete Chloroplast Genome Sequence of Glycine max and Comparative Analyses with other Legume Genomes
resolves10.1093/molbev/msi182
The Chloroplast Genome Sequence of the Green Alga Pseudendoclonium akinetum (Ulvophyceae) Reveals Unusual Structural Features and New Insights into the Branching Order of Chlorophyte Lineages
resolves10.1093/molbev/msi173
Analysis of Acorus calamus Chloroplast Genome and Its Phylogenetic Implications
resolves10.1089/gst.1995.1.9
TIGR Assembler: A New Tool for Assembling Large Shotgun Sequencing Projects
resolves10.1186/1471-2105-5-113
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
resolves10.1093/molbev/msi129
Evaluating the Performance of a Successive-Approximations Approach to Parameter Optimization in Maximum-Likelihood Phylogeny Estimation
resolves10.1073/pnas.91.21.9794
Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii.
resolves10.1007/BF02464880
The complete sequence of the rice (Oryza sativa) chloroplast genome: Intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals
resolves10.1093/dnares/11.2.93
Complete Nucleotide Sequence of the Sugarcane (Saccharum Officinarum) Chloroplast Genome: A Comparative Analysis of Four Monocot Chloroplast Genomes
resolves10.1006/jmbi.1995.0460
Complete Sequence of the Maize Chloroplast Genome: Gene Content, Hotspots of Divergence and Fine Tuning of Genetic Information by Transcript Editing
resolves10.1093/oxfordjournals.molbev.a004222
The Plastid Chromosome of <i>Atropa belladonna</i> and its Comparison with that of <i>Nicotiana tabacum</i>: The Role of RNA Editing in Generating Divergence in the Process of Plant Speciation
resolves10.1093/dnares/dsi006
Complete Nucleotide Sequence of the Chloroplast Genome from the Tasmanian Blue Gum, Eucalyptus globulus (Myrtaceae)
resolves10.1002/j.1460-2075.1986.tb04464.x
The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression
resolves10.1023/A:1006478403810
The plastid chromosome of spinach (Spinacia oleracea): complete nucleotide sequence and gene organization
resolves10.1046/j.1095-8339.2003.t01-1-00158.x
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II
The 13 references without a DOI — listed, not checked
no DOI — not checkedHandbook of Energy Crops. [http://www.hort.purdue.edu/newcrop/duke_energy/Daucus_carota.html]
no DOI — not checkedDaniell H, Ruiz ON, Dhingra A: Chloroplast genetic engineering to improve agronomic traits. Meth Mol Biol. 2005, 286: 111-
no DOI — not checked[http://megasun.bch.umontreal.ca/ogmp/projects/other/cp.list.html]
no DOI — not checkedSoltis DE, Soltis PS, Endress PK, Chase MW: Phylogeny and Evolution of Angiosperms. 2005, Sunderland, MA: Sinauer Associates Inc
no DOI — not checkedBaranski R, Klocke E, Schumann G: Green fluorescent protein as an efficient selection marker for Agrobacterium rhizogenes mediated carrot transformation. Plant Cell Rep. 2005, 1-8.
no DOI — not checkedSanjeevi CB, Falorni A, Robertson J, Lernmark A: Glutamic acid decarboxylase (GAD) in insulin-dependent diabetes mellitus. Diabet Nutr Metab. 1996, 9: 167-182.
no DOI — not checkedHupfer H, Swiatek M, Hornung S, Herrmann RG, Maier RM, Chiu WL, Sears B: Complete nucleotide sequence of the Oenothera elata plastid chromosome, representing plastome I of the five distinguishable euoenothera plastomes. Mol Gen Genet. 2000, 263: 581-585.
no DOI — not checkedChumley TWPJ, Mower JP, Boore JL, Fourcade HM, Caile PJ, Jansen RK: The complete chloroplast genome sequence of Pelargonium x hortorum: Organization and evolution of the largest and most highly rearranged chloroplast genome of land plants. Mol Biol Evol. 2006,
no DOI — not checkedPalmer JD: Isolation and structural analysis of chloroplast DNA. Methods in Enzymology. 1986, Academic Press, 118: 167-186.
no DOI — not checkedJansen RKRL, Boore JL, dePamphilis CW, Chumley TW, Haberle RC, Wyman SK, Alverson AJ, Peery R, Herman SJ, Fourcade HM, Kuehl JV, McNeal JR, Leebens-Mack J, Cui L: Methods for obtaining and analyzing chloroplast genome sequences. Methods in Enzymology. 2005, Academic Press, 395: 348-384. 10.1016/S0076-6879(05)95020-9.
no DOI — not checked[http://bugmaster.jgi-psf.org/repeats/]
no DOI — not checked[http://chloroplast.cbio.psu.edu]
no DOI — not checkedSwofford D: PAUP*: Phylogenetic analysis using parsimony (*and other methods), ver. 4.0. 2003
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