Reference health

Transcriptome profiling of the floating-leaved aquatic plant Nymphoides peltata in response to flooding stress

https://doi.org/10.1186/s12864-017-3515-y
CiteStamped reference-health badge
61/61 checkable references clean · checked 2026-07-22

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

5 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

The 61 checked references that resolve
resolves10.1111/j.1469-8137.2011.03702.x
Plants and flooding stress
resolves10.1093/jexbot/53.368.391
Submergence research using Rumex palustris as a model; looking back and going forward
resolves10.1016/j.tplants.2004.07.005
Plant responses to hypoxia – is survival a balancing act?
resolves10.1146/annurev.arplant.59.032607.092752
Flooding Stress: Acclimations and Genetic Diversity
resolves10.1111/nph.13209
Flood adaptive traits and processes: an overview
resolves10.1111/j.1365-313X.2005.02477.x
Ethylene regulates fast apoplastic acidification and expansin A transcription during submergence‐induced petiole elongation in <i>Rumex palustris</i>
resolves10.1186/1939-8433-5-2
Mechanisms for coping with submergence and waterlogging in rice
resolves10.1002/pmic.201400156
Comparative proteomic analysis revealing the complex network associated with waterlogging stress in maize ( <i>Zea mays</i> L.) seedling root cells
resolves10.1038/nature08258
The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water
resolves10.1016/0304-3770(93)90068-8
Evolutionary processes in aquatic plant populations
resolves10.1007/BF00124772
Ethylene and growth control in the fringed waterlily (Nymphoides peltata): Stimulation of cell division and interaction with buoyant tension in petioles
resolves10.1016/j.aquabot.2010.11.004
Differential responses of the floating-leaved aquatic plant Nymphoides peltata to gradual versus rapid increases in water levels
resolves10.1007/BF00385005
The stimulation of cell extension by ethylene and auxin in aquatic plants
resolves10.1111/j.1471-8286.2005.00921.x
Isolation and characterization of highly polymorphic microsatellites in the aquatic plant, <i>Nymphoides peltata</i> (Menyanthaceae)
resolves10.1111/jse.12023
Genotypic diversity and genetic structure of populations of the distylous aquatic plant<i>Nymphoides peltata</i>(<scp>M</scp>enyanthaceae) in China
resolves10.1101/gr.079558.108
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
resolves10.1038/nrg2484
RNA-Seq: a revolutionary tool for transcriptomics
resolves10.1007/s11033-011-1395-9
Gene expression profiling of Sinapis alba leaves under drought stress and rewatering growth conditions with Illumina deep sequencing
resolves10.1105/tpc.113.119016
Two Rumex Species from Contrasting Hydrological Niches Regulate Flooding Tolerance through Distinct Mechanisms
resolves10.1186/s12870-014-0201-y
De novo sequencing, assembly, and analysis of the Taxodium‘Zhongshansa’ roots and shoots transcriptome in response to short-term waterlogging
resolves10.1093/pcp/pcl011
Identification and Expression Analysis of Twelve Members of the Nucleobase–Ascorbate Transporter (NAT) Gene Family in Arabidopsis thaliana
resolves10.1016/j.plaphy.2013.11.023
Arabidopsis mutants affecting oxylipin signaling in photo-oxidative stress responses
resolves10.1146/annurev.pp.43.060192.000503
Superoxide Dismutase and Stress Tolerance
resolves10.1071/FP14093
Post–flood nitrogen and basal phosphorus management affects survival, metabolic changes and anti-oxidant enzyme activities of submerged rice (Oryza sativa)
resolves10.1007/978-94-007-2220-0_8
Plant Response and Tolerance to Abiotic Oxidative Stress: Antioxidant Defense Is a Key Factor
resolves10.1093/jexbot/53.372.1331
Role of superoxide dismutases (SODs) in controlling oxidative stress in plants
resolves10.1093/aob/mcf118
Antioxidants, Oxidative Damage and Oxygen Deprivation Stress: a Review
resolves10.1104/pp.106.077073
Reactive Species and Antioxidants. Redox Biology Is a Fundamental Theme of Aerobic Life
resolves10.1104/pp.111.191122
Reactive Oxygen Species-Driven Transcription in Arabidopsis under Oxygen Deprivation  
resolves10.3390/ijms14022637
The Transcriptome of Brassica napus L. Roots under Waterlogging at the Seedling Stage
resolves10.1111/j.1365-3040.1994.tb00324.x
The interactive effects of light and inorganic carbon on aquatic plant growth
resolves10.1046/j.1365-3040.2003.00846.x
Long‐distance transport of gases in plants: a perspective on internal aeration and radial oxygen loss from roots
resolves10.1071/PP98095
<i>Review</i> : Mechanisms of anoxia tolerance in plants. I. Growth, survival and anaerobic catabolism
resolves10.1071/PP01187
Freshwater angiosperm carbon concentrating mechanisms: processes and patterns
resolves10.1016/0304-3770(89)90050-8
Bicarbonate utilization: Function and mechanism
resolves10.1007/BF02856581
CAM photosynthesis in submerged aquatic plants
resolves10.1086/374192
Evolution of CAM and C<sub>4</sub>Carbon‐Concentrating Mechanisms
resolves10.1111/j.1365-2427.1992.tb00540.x
Photosynthetic use of inorganic carbon among primary and secondary water plants in streams
resolves10.1016/S0304-3770(98)00107-7
Plant growth and photosynthesis in the transition zone between land and stream
resolves10.1093/pcp/pcp163
Global Gene Expression Responses to Waterlogging in Roots and Leaves of Cotton (Gossypium hirsutum L.)
resolves10.1016/S1360-1385(99)01450-8
Ethanolic fermentation: new functions for an old pathway
resolves10.1111/j.1365-313X.2006.03023.x
Alanine aminotransferase catalyses the breakdown of alanine after hypoxia in <i>Arabidopsis thaliana</i>
resolves10.1016/S0098-8472(02)00108-9
Alanine metabolism and alanine aminotransferase activity in soybean (Glycine max) during hypoxia of the root system and subsequent return to normoxia
resolves10.1104/pp.109.150045
Glycolysis and the Tricarboxylic Acid Cycle Are Linked by Alanine Aminotransferase during Hypoxia Induced by Waterlogging of <i>Lotus japonicus</i>
resolves10.1038/nature10534
Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants
resolves10.1016/j.plantsci.2008.02.005
Abiotic stress response in plants: When post-transcriptional and post-translational regulations control transcription
resolves10.1038/nbt.1883
Full-length transcriptome assembly from RNA-Seq data without a reference genome
resolves10.1093/bioinformatics/btl158
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
resolves10.1093/bioinformatics/btg034
TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets
resolves10.1038/nprot.2012.016
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
resolves10.1038/nmeth.1226
Mapping and quantifying mammalian transcriptomes by RNA-Seq
resolves10.1093/bioinformatics/btp616
<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data
resolves10.1073/pnas.0409137102
An algorithm for progressive multiple alignment of sequences with insertions
resolves10.1093/oxfordjournals.molbev.a026334
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
resolves10.1093/molbev/msm088
PAML 4: Phylogenetic Analysis by Maximum Likelihood
resolves10.1111/j.1365-313X.2010.04149.x
HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana
resolves10.1016/j.tplants.2011.12.004
Making sense of low oxygen sensing
resolves10.1073/pnas.94.18.9979
Expression of an ortholog of replication protein A1 (RPA1) is induced by gibberellin in deepwater rice
resolves10.1073/pnas.0807821105
Submergence tolerance conferred by <i>Sub1A</i> is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice
resolves10.1071/FP11251
Comparative transcriptional profiling of two rice genotypes carrying SUB1A-1 but exhibiting differential tolerance to submergence
resolves10.1111/pce.12268
Phenomic networks reveal largely independent root and shoot adjustment in waterlogged plants of <scp><i>L</i></scp><i>otus japonicus</i>
The 5 references without a DOI — listed, not checked
no DOI — not checkedHossain MA, Uddin SN. Mechanisms of waterlogging tolerance in wheat: morphological and metabolic adaptations under hypoxia or anoxia. Aust J Crop Sci. 2011;5(9):1094–101.
no DOI — not checkedHo TNO, Ornduff RM. Menyanthaceae in Flora of China, vol 16. Beijing and St. Louis: Science Press and Missouri Botanical Garden Press; 1995.
no DOI — not checkedPang T, Ye CY, Xia X, Yin W. De novo sequencing and transcriptome analysis of the desert shrub, Ammopiptanthus mongolicus, during cold acclimation using Illumina/Solexa. BMC Genomics. 2013;14(488):1471–2164.
no DOI — not checkedPourabdal L, Heidary R, Farboodnia T. The effects of flooding stress on induction of oxidative stress and antioxidant enzymes activity in Zea mays L. seedlings. Res J Biol Sci. 2008;3:391–4.
no DOI — not checkedColmer TD, Winkel A, Pedersen O. A perspective on underwater photosynthesis in submerged terrestrial wetland plants. Ann Bot. 2011;62:567–88.
What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

checked 2026-07-22 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record

Embed this badge

Both snippets point at the live badge image and link back to this page. The badge re-renders from the daily check, so an embed never goes stale by more than a day of visits.

<a href="https://citestamp.com/citestamped/10.1186/s12864-017-3515-y"><img src="https://citestamp.com/citestamped/10.1186/s12864-017-3515-y/badge.svg" alt="CiteStamped reference-health badge" width="460" height="64"></a>
[![CiteStamped reference-health badge](https://citestamp.com/citestamped/10.1186/s12864-017-3515-y/badge.svg)](https://citestamp.com/citestamped/10.1186/s12864-017-3515-y)