Reference health
Genome-wide analysis of rice cis-natural antisense transcription under cadmium exposure using strand-specific RNA-Seq
29/29 checkable references clean · checked 2026-07-23
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
1 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 29 checked references that resolve
resolves10.1093/bioinformatics/btp324
Fast and accurate short read alignment with Burrows–Wheeler transform
resolves10.1105/tpc.109.072041
Global Epigenetic and Transcriptional Trends among Two Rice Subspecies and Their Reciprocal Hybrids
resolves10.1101/gr.106120.110
Function annotation of the rice transcriptome at single-nucleotide resolution by RNA-seq
resolves10.1002/bies.201400079
Incorporating alternative splicing and mRNA editing into the genetic analysis of complex traits
resolves10.1186/1471-2164-13-721
Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice
resolves10.1101/gr.165555.113
Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in <i>Arabidopsis</i>
resolves10.1186/1471-2229-13-208
Global analysis of cis-natural antisense transcripts and their heat-responsive nat-siRNAs in Brassica rapa
resolves10.1038/nature08618
Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target
resolves10.1105/tpc.113.116251
A Rice <i>cis</i>-Natural Antisense RNA Acts as a Translational Enhancer for Its Cognate mRNA and Contributes to Phosphate Homeostasis and Plant Fitness
resolves10.14806/ej.17.1.200
Cutadapt removes adapter sequences from high-throughput sequencing reads
resolves10.1093/nar/gkj094
The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information
resolves10.1186/gb-2009-10-3-r25
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
resolves10.1371/journal.pone.0096946
Genome-Wide Transcriptome Analysis Reveals that Cadmium Stress Signaling Controls the Expression of Genes in Drought Stress Signal Pathways in Rice
resolves10.1126/science.1088305
Empirical Analysis of Transcriptional Activity in the
<i>Arabidopsis</i>
Genome
resolves10.1007/s12284-011-9064-0
mRNA-Seq Reveals a Comprehensive Transcriptome Profile of Rice under Phosphate Stress
resolves10.1186/1471-2229-14-101
RNA sequencing-mediated transcriptome analysis of rice plants in endoplasmic reticulum stress conditions
resolves10.1105/tpc.109.066902
Orthologs of the Class A4 Heat Shock Transcription Factor HsfA4a Confer Cadmium Tolerance in Wheat and Rice
resolves10.1111/j.1365-3040.2008.01919.x
Over‐expression of <i>STP13</i>, a hexose transporter, improves plant growth and nitrogen use in <i>Arabidopsis thaliana</i> seedlings
resolves10.1007/BF00020016
A probable lipid transfer protein gene is induced by NaCl in stems of tomato plants
resolves10.1046/j.1399-3054.2003.00183.x
The plant glutathione transferase gene family: genomic structure, functions, expression and evolution
resolves10.1105/tpc.15.00227
The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling
resolves10.1073/pnas.1401680111
Rice actin-binding protein RMD is a key link in the auxin–actin regulatory loop that controls cell growth
resolves10.1073/pnas.0708743105
Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
The 1 reference without a DOI — listed, not checked
no DOI — not checkedYoshida S, Forno AD, Cock HJ, Gomez AK. Laboratory manual for physiological studies of Rice. 3rd ed. Manila: The International Rice Research Institute (IRRI); 1976.
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