Reference health
De novo sequencing, assembly, and analysis of the Taxodium‘Zhongshansa’ roots and shoots transcriptome in response to short-term waterlogging
47/47 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
4 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 47 checked references that resolve
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Taxonomy and Nomenclature of Baldcypress, Pondcypress, and Montezuma Cypress: One, Two, or Three Species?
resolves10.1093/treephys/16.1-2.307
Interaction of flooding and salinity stress on baldcypress (Taxodium distichum)
resolves10.1093/pcp/pcp163
Global Gene Expression Responses to Waterlogging in Roots and Leaves of Cotton (Gossypium hirsutum L.)
resolves10.1104/pp.119.1.57
Arabidopsis Roots and Shoots Have Different Mechanisms for Hypoxic Stress Tolerance
resolves10.1105/tpc.004747
Expression Profile Analysis of the Low-Oxygen Response in Arabidopsis Root Cultures[W]
resolves10.1104/pp.122.2.295
Patterns of Protein Synthesis and Tolerance of Anoxia in Root Tips of Maize Seedlings Acclimated to a Low-Oxygen Environment, and Identification of Proteins by Mass Spectrometry
resolves10.1104/pp.108.125989
Differential Response of Gray Poplar Leaves and Roots Underpins Stress Adaptation during Hypoxia
resolves10.1101/gr.079558.108
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
resolves10.1186/1471-2164-14-488
De novo sequencing and transcriptome analysis of the desert shrub, Ammopiptanthus mongolicus, during cold acclimation using Illumina/Solexa
resolves10.1016/j.gene.2012.09.100
Gene expression profiling of soybean leaves and roots under salt, saline–alkali and drought stress by high-throughput Illumina sequencing
resolves10.1007/s11033-011-1395-9
Gene expression profiling of Sinapis alba leaves under drought stress and rewatering growth conditions with Illumina deep sequencing
resolves10.1111/j.1399-3054.2012.01653.x
Genome‐wide identification and analysis of microRNA responding to long‐term waterlogging in crown roots of maize seedlings
resolves10.1016/j.ygeno.2011.12.008
Identification of differentially expressed genes in cucumber (Cucumis sativus L.) root under waterlogging stress by digital gene expression profile
resolves10.1007/s11738-012-1024-9
Global gene expression responses to waterlogging in roots of sesame (Sesamum indicum L.)
resolves10.1007/s00299-013-1529-8
Global gene expression responses to waterlogging in leaves of rape seedlings
resolves10.1371/journal.pone.0082155
Transcriptome Analysis of Portunus trituberculatus in Response to Salinity Stress Provides Insights into the Molecular Basis of Osmoregulation
resolves10.1038/nbt.1883
Full-length transcriptome assembly from RNA-Seq data without a reference genome
resolves10.1186/1471-2105-12-323
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
resolves10.1093/bioinformatics/btp616
<tt>edgeR</tt>
: a Bioconductor package for differential expression analysis of digital gene expression data
resolves10.1214/aos/1074290335
The positive false discovery rate: a Bayesian interpretation and the q-value
resolves10.1093/bioinformatics/bti430
Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary
resolves10.1073/pnas.0906131106
Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in
<i>Arabidopsis</i>
resolves10.1371/journal.pone.0028888
Insights into Hypoxic Systemic Responses Based on Analyses of Transcriptional Regulation in Arabidopsis
resolves10.1104/pp.109.151845
Cross-Kingdom Comparison of Transcriptomic Adjustments to Low-Oxygen Stress Highlights Conserved and Plant-Specific Responses
resolves10.1016/j.plantsci.2004.04.004
Study of the root antioxidative system of tomatoes and eggplants under waterlogged conditions
resolves10.1016/j.actao.2009.01.007
Effects of waterlogging on seed germination of three Mediterranean oak species: Ecological implications
resolves10.1016/S0981-9428(01)01262-1
Enhancement of the inhibitory activity for greening in xylem sap of squash root with waterlogging
resolves10.1104/pp.109.3.1047
Overexpression of Glutathione Reductase but Not Glutathione Synthetase Leads to Increases in Antioxidant Capacity and Resistance to Photoinhibition in Poplar Trees
resolves10.1007/s11099-008-0005-0
Alterations in photosynthesis and antioxidant enzyme activity in winter wheat subjected to post-anthesis water-logging
resolves10.1016/S0168-9452(02)00080-8
Alterations in photosynthesis and some antioxidant enzymatic activities of mungbean subjected to waterlogging
resolves10.1111/j.1399-3054.2007.01029.x
Antioxidant enzymatic activity is linked to waterlogging stress tolerance in citrus
resolves10.1515/BC.2000.093
Metabolic Activity Decreases as an Adaptive Response to Low Internal Oxygen in Growing Potato Tubers
resolves10.1111/j.1469-8137.2010.03589.x
Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia
resolves10.4161/psb.5.8.12231
Comparisons of early transcriptome responses to low-oxygen environments in three dicotyledonous plant species
resolves10.1016/S1369-5266(03)00037-2
Trehalose metabolism: a regulatory role for trehalose-6-phosphate?
resolves10.3389/fpls.2013.00349
How unique is the low oxygen response? An analysis of the anaerobic response during germination and comparison with abiotic stress in rice and Arabidopsis
resolves10.1111/j.1365-3040.2011.02309.x
Contrasting growth and adaptive responses of two oak species to flooding stress: role of non‐symbiotic haemoglobin
resolves10.1104/pp.113.222588
Root Transcript Profiling of Two <i>Rorippa</i> Species Reveals Gene Clusters Associated with Extreme Submergence Tolerance
The 4 references without a DOI — listed, not checked
no DOI — not checkedZheng W: SYLVA SINICA, Volume 1. China Forestry Publishing House, Beijing 1983.
no DOI — not checkedHua J, Yin Y, Zhou D, Yu C, Xu J: Effects of soil water conditions on growth and physiology of Taxodium ‘Zhongshanshan 406’. J Ecol Rural Environ. 2011, 6: 10-In Chinese
no DOI — not checkedYoung MD, Wakefield MJ, Smyth GK, Oshlack A: Method gene ontology analysis for RNA-seq: accounting for selection bias. Genome Biol 2010. PubMed.,
no DOI — not checkedSairam RK, Kumutha D, Ezhilmathi K: Waterlogging tolerance: nonsymbiotic haemoglobin-nitric oxide homeostasis and antioxidants. Curr Sci. 2009, 96 (5): 674-682.
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