Every reference with a DOI in the deposited reference list resolved to a known
work in Crossref or DataCite at the dated check, and none carried a retraction,
withdrawal, or removal notice.
The 109 checked references that resolve
resolves10.1073/pnas.1307701110Present and future global distributions of the marine Cyanobacteria
<i>Prochlorococcus</i>
and
<i>Synechococcus</i>
resolves10.1038/ismej.2010.36Significant CO2 fixation by small prymnesiophytes in the subtropical and tropical northeast Atlantic Ocean
resolves10.1111/j.1462-2920.2007.01440.xGlobal phylogeography of marine
<i>Synechococcus</i>
and
<i>Prochlorococcus</i>
reveals a distinct partitioning of lineages among oceanic biomes
resolves10.1038/nature01947Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation
resolves10.1073/pnas.1733211100Genome sequence of the cyanobacterium
<i>Prochlorococcus marinus</i>
SS120, a nearly minimal oxyphototrophic genome
resolves10.1073/pnas.0602963103Genome sequence of
<i>Synechococcus</i>
CC9311: Insights into adaptation to a coastal environment
resolves10.1111/1462-2920.14552Marine
<i>Synechococcus</i>
isolates representing globally abundant genomic lineages demonstrate a unique evolutionary path of genome reduction without a decrease in GC content
resolves10.3389/fmicb.2020.567431Evolutionary Mechanisms of Long-Term Genome Diversification Associated With Niche Partitioning in Marine Picocyanobacteria
resolves10.1371/journal.pone.0084459A Gene Island with Two Possible Configurations Is Involved in Chromatic Acclimation in Marine Synechococcus
resolves10.1186/gb-2007-8-12-r259Diversity and evolution of phycobilisomes in marine Synechococcusspp.: a comparative genomics study
resolves10.1073/pnas.1717069115Light color acclimation is a key process in the global ocean distribution of
<i>Synechococcus cyanobacteria</i>
resolves10.1093/jxb/eri286The environmental plasticity and ecological genomics of the cyanobacterial CO2 concentrating mechanism
resolves10.1093/nar/gkaa958Cyanorak v2.1: a scalable information system dedicated to the visualization and expert curation of marine and brackish picocyanobacteria genomes
resolves10.1128/mSystems.00842-20Discovery of Euryhaline Phycoerythrobilin-Containing
<i>Synechococcus</i>
and Its Mechanisms for Adaptation to Estuarine Environments
resolves10.3389/fmicb.2020.01979Genomic Comparison and Spatial Distribution of Different Synechococcus Phylotypes in the Black Sea
resolves10.1038/s41396-019-0378-zThe mesopelagic anoxic Black Sea as an unexpected habitat for <i>Synechococcus</i> challenges our understanding of global “deep red fluorescence”
resolves10.1186/s12864-018-4648-3Genome analysis of the freshwater planktonic Vulcanococcus limneticus sp. nov. reveals horizontal transfer of nitrogenase operon and alternative pathways of nitrogen utilization
resolves10.3389/fmicb.2019.00045Insights Into the Evolution of Picocyanobacteria and Phycoerythrin Genes (mpeBA and cpeBA)
resolves10.1007/PL00006517Detection of Seven Major Evolutionary Lineages in Cyanobacteria Based on the 16S rRNA Gene Sequence Analysis with New Sequences of Five Marine Synechococcus Strains
resolves10.1099/00207713-51-3-861Phylogenetic analyses of Synechococcus strains (cyanobacteria) using sequences of 16S rDNA and part of the phycocyanin operon reveal multiple evolutionary lines and reflect phycobilin content.
resolves10.1099/mic.0.25475-0Ecosystem-dependent adaptive radiations of picocyanobacteria inferred from 16S rRNA and ITS-1 sequence analysis
resolves10.1073/pnas.1217107110Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
resolves10.1073/pnas.1524865113Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria
resolves10.1128/AEM.69.5.2430-2443.2003Clade-Specific 16S Ribosomal DNA Oligonucleotides Reveal the Predominance of a Single Marine
<i>Synechococcus</i>
Clade throughout a Stratified Water Column in the Red Sea
resolves10.1111/j.1472-4669.2009.00220.xTiming of morphological and ecological innovations in the cyanobacteria – a key to understanding the rise in atmospheric oxygen
resolves10.1128/AEM.02411-13GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis
resolves10.1186/s40168-019-0731-5Marine-freshwater prokaryotic transitions require extensive changes in the predicted proteome
resolves10.1002/lno.11401Microbiome of the deep Lake Baikal, a unique oxic bathypelagic habitat
resolves10.1128/jb.173.9.2739-2750.1991Characterization and mutagenesis of sulfur-regulated genes in a cyanobacterium: evidence for function in sulfate transport
resolves10.1128/AEM.01272-10Characterization of Cyanate Metabolism in Marine
<i>Synechococcus</i>
and
<i>Prochlorococcus</i>
spp
resolves10.1371/journal.pone.0116145Bacterial Community Composition in Three Freshwater Reservoirs of Different Alkalinity and Trophic Status
resolves10.3390/life5010432Functional Characterization of the FNT Family Nitrite Transporter of Marine Picocyanobacteria
resolves10.1074/jbc.272.5.3036Substrate-binding Lipoprotein of the Cyanobacterium Synechococcus sp. Strain PCC 7942 Involved in the Transport of Nitrate and Nitrite
resolves10.4319/lo.2000.45.6.1213Total nitrogen, total phosphorus, and nutrient limitation in lakes and oceans: Is there a common relationship?
resolves10.3354/ame039257Ecotypic variation in phosphorus-acquisition mechanisms within marine picocyanobacteria
resolves10.1128/AEM.68.8.4107-4110.2002Accumulation of Inorganic Polyphosphate in
<i>phoU</i>
Mutants of
<i>Escherichia coli</i>
and
<i>Synechocystis</i>
sp. Strain PCC6803
resolves10.1128/JB.00029-14The PhoU Protein from Escherichia coli Interacts with PhoR, PstB, and Metals To Form a Phosphate-Signaling Complex at the Membrane
resolves10.1111/j.1462-2920.2010.02310.xPrevalence of a calcium‐based alkaline phosphatase associated with the marine cyanobacterium
<i>Prochlorococcus</i>
and other ocean bacteria
resolves10.3390/geosciences8120471Effects of Phosphorus in Growth Media on Biomineralization and Cell Surface Properties of Marine Cyanobacteria Synechococcus
resolves10.1038/nature10568Structure and function of the AAA+ protein CbbX, a red-type Rubisco activase
resolves10.1073/pnas.2019715118Molecular bases of an alternative dual-enzyme system for light color acclimation of marine
<i>Synechococcus</i>
cyanobacteria
resolves10.1038/ismej.2014.35Picocyanobacteria containing a novel pigment gene cluster dominate the brackish water Baltic Sea
resolves10.1111/j.1574-6968.2000.tb08933.xGene cloning, nucleotide sequence and biochemical properties of a cytoplasmic cyclomaltodextrinase (neopullulanase) from<i>Alicyclobacillus acidocaldarius</i>, reclassification of a group of enzymes
resolves10.1111/1462-2920.13985Thermoacclimation and genome adaptation of the membrane lipidome in marine
<i>Synechococcus</i>
resolves10.1038/ismej.2015.179Effects of low temperature on tropical and temperate isolates of marine <i>Synechococcus</i>
resolves10.1111/j.1574-6968.1996.tb08150.xIdentification of iron Superoxide dismutase and a copper/zinc Superoxide dismutase enzyme activity within the marine cyanobacterium<i>Synechococcus</i>sp. WH 7803
resolves10.1038/ismej.2015.115Co-occurring<i>Synechococcus</i>ecotypes occupy four major oceanic regimes defined by temperature, macronutrients and iron
resolves10.1007/BF02186215Isolation and purification of Australian isolates of the toxic cyanobacteriumMicrocystis aeruginosa Kütz
resolves10.3389/fmicb.2019.00908Bacterioplankton Community Composition Along Environmental Gradients in Lakes From Byers Peninsula (Maritime Antarctica) as Determined by Next-Generation Sequencing
resolves10.1089/cmb.2012.0021SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
resolves10.1093/nar/gkt1226The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
resolves10.1093/nar/29.1.22The COG database: new developments in phylogenetic classification of proteins from complete genomes
resolves10.1093/nar/29.1.41TIGRFAMs: a protein family resource for the functional identification of proteins
resolves10.1093/nar/25.5.955tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
resolves10.1101/gr.186072.114CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
resolves10.1038/nbt.4229A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
resolves10.1038/s41467-020-16366-7Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
resolves10.1093/nar/gkf436MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
resolves10.1093/molbev/msu300IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
resolves10.1186/1471-2164-13-577Estimating variation within the genes and inferring the phylogeny of 186 sequenced diverse Escherichia coli genomes
resolves10.1186/1745-6150-7-46Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer
resolves10.1093/nar/25.17.3389Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
resolves10.1093/nar/gkw1129CDD/SPARCLE: functional classification of proteins via subfamily domain architectures
The 11 references without a DOI — listed, not checked
no DOI — not checkedGarcia-Pichel F, Belnap J, Neuer S, Schanz F. Estimates of global cyanobacterial biomass and its distribution. Arch Hydrobiol Suppl Algol Stud E Schweizerbart’sche Verlagsbuchhandlung. 2003;109:213.
no DOI — not checkedPartensky F, Blanchot J, Vaulot D. Differential distribution and ecology of Prochlorococcus and Synechococcus in oceanic waters: a review. Bull Oceanogr Monaco, no Spec. 1999;19:457–76.
no DOI — not checkedStockner J, Callieri C, Cronberg G. Picoplankton and other non-bloom-forming cyanobacteria in lakes. In: Whitton BA, Potts M, editors. The ecology of cyanobacteria. The Netherlands: Springer; 2000. p. 195–231.
no DOI — not checkedCamacho A, Picazo A, Miracle MR, Vicente E. Spatial distribution and temporal dynamics of picocyanobacteria in a meromictic karstic lake. Arch Hydrobiol Suppl Algol Stud. 2003;109:171–84.
no DOI — not checkedRaven J, Caldeira K, Elderfield H, Hoegh-Guldberg O, Liss P, Riebesell U, et al. Ocean acidification due to increasing atmospheric carbon dioxide; 2005. Royal Soc. Report.
no DOI — not checkedHecky RE, Kilham P. Nutrient limitation of phytoplankton in freshwater and marine environments: a review of recent evidence on the effects of enrichment 1. Limnol Oceanogr. 1988;33:796–822.
no DOI — not checkedVilaclara G, Chávez M, Lugo A, González H, Gaytán M. Comparative description of crater-lakes basic chemistry in Puebla State, Mexico. Int Vereinigung für Theor und Angew Limnol Verhandlungen. 1993;25:435–40 Taylor & Francis.
no DOI — not checkedCallieri C, Mandolini E, Bertoni R, Lauceri R, Picazo A, Camacho A, et al. Atlas of picocyanobacteria monoclonal strains from the collection of CNR-IRSA. Italy J Limnol. 2021;80:2002.
no DOI — not checkedNawrocki EP, Eddy SR. ssu-align: a tool for structural alignment of SSU rRNA sequences. URL http://selab.janelia.org/software.html; 2010.
no DOI — not checkedKang D, Li F, Kirton ES, Thomas A, Egan RS, An H, et al. MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies. PeerJ. 2019;7:e27522v1.
no DOI — not checkedRozen S, Skaletsky H. Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol. 2000;132:365–86.
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