Reference health

Recommendations for the packaging and containerizing of bioinformatics software

https://doi.org/10.12688/f1000research.15140.2

17/17 checkable references clean · checked 2026-07-14

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a publisher retraction, withdrawal, or removal notice.

The 17 checked references that resolve

resolves10.1016/S0140-6736(13)62329-6

Biomedical research: increasing value, reducing waste

resolves10.1038/533452a

1,500 scientists lift the lid on reproducibility

resolves10.1371/journal.pcbi.1003285

Ten Simple Rules for Reproducible Computational Research

resolves10.7490/f1000research.1114482.1

The backbone of research reproducibility - sustainable and flexible tool deployment

resolves10.1371/journal.pcbi.1004947

Ten Simple Rules for Taking Advantage of Git and GitHub

resolves10.12688/f1000research.11407.1

Four simple recommendations to encourage best practices in research software

resolves10.1145/2723872.2723882

An introduction to Docker for reproducible research

resolves10.1093/bioinformatics/btx192

BioContainers: an open-source and community-driven framework for software standardization

resolves10.1093/molbev/msy084

Biology Needs Evolutionary Software Tools: Let’s Build Them Right

resolves10.1101/207092

Bioconda: A sustainable and comprehensive software distribution for the life sciences

resolves10.1016/j.jbiotec.2017.05.016

OpenMS – A platform for reproducible analysis of mass spectrometry data

resolves10.1093/nar/gky379

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

resolves10.1371/journal.pone.0177459

Singularity: Scientific containers for mobility of compute

resolves10.1109/MS.2016.64

Microservices Architecture Enables DevOps: Migration to a Cloud-Native Architecture

resolves10.3389/fgene.2014.00199

On best practices in the development of bioinformatics software

resolves10.1016/0376-8716(81)90037-5

Primary drug abuse among women: A national study

resolves10.1093/nar/gkv1116

Tools and data services registry: a community effort to document bioinformatics resources

What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a publisher retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

checked 2026-07-14 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record

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