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PyFMLab: Open-source software for atomic force microscopy microrheology data analysis

https://doi.org/10.12688/openreseurope.16550.1
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1 of 61 checkable references need attention · checked 2026-07-22

At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.

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References needing attention

does not resolve to a known work10.1515/9783112342404-004
The 60 checked references that resolve
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Microrheology of Human Lung Epithelial Cells Measured by Atomic Force Microscopy
resolves10.1021/la0110850
Correction of Microrheological Measurements of Soft Samples with Atomic Force Microscopy for the Hydrodynamic Drag on the Cantilever
resolves10.1103/PhysRevE.74.021911
Power laws in microrheology experiments on living cells: Comparative analysis and modeling
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An approximate solution for the contact area and elastic compliance of a smooth punch of arbitrary shape
resolves10.1016/j.ymeth.2021.01.008
TopoStats – A program for automated tracing of biomolecules from AFM images
resolves10.1115/1.2893754
Regular Pyramid Punch Problem
resolves10.1016/0009-2509(61)80035-3
The slow motion of a sphere through a viscous fluid towards a plane surface
resolves10.1016/j.bpj.2016.12.032
Viscoelastic Properties of Confluent MDCK II Cells Obtained from Force Cycle Experiments
resolves10.1007/s00424-008-0524-3
Elasticity measurement of living cells with an atomic force microscope: data acquisition and processing
resolves10.1039/d2nh00390b
Nano-structural stiffness measure for soft biomaterials of heterogeneous elasticity
resolves10.1515/9783110640632-007
3.1.3 AFM Calibration Issues
resolves10.1016/0009-2509(67)80208-2
The slow motion of a sphere through a viscous fluid towards a plane surface—II Small gap widths, including inertial effects
resolves10.1021/la9713006
Measuring the Elastic Properties of Thin Polymer Films with the Atomic Force Microscope
resolves10.1038/s41598-020-70361-y
Viscoelasticity in simple indentation-cycle experiments: a computational study
resolves10.1038/s41598-017-01784-3
Measuring nanoscale viscoelastic parameters of cells directly from AFM force-displacement curves
resolves10.1038/s41563-022-01400-4
Matrix viscoelasticity controls spatiotemporal tissue organization
resolves10.1016/j.cell.2006.06.044
Matrix Elasticity Directs Stem Cell Lineage Specification
resolves10.1039/d3nr00757j
Coupled mechanical mapping and interference contrast microscopy reveal viscoelastic and adhesion hallmarks of monocyte differentiation into macrophages
resolves10.1103/PhysRevLett.87.148102
Scaling the Microrheology of Living Cells
resolves10.3389/fphy.2021.711860
Oscillatory Microrheology, Creep Compliance and Stress Relaxation of Biological Cells Reveal Strong Correlations as Probed by Atomic Force Microscopy
resolves10.1039/c9nr10316c
Nanorheology of living cells measured by AFM-based force–distance curves
resolves10.1039/c8nr05899g
Determination of the viscoelastic properties of a single cell cultured on a rigid support by force microscopy
resolves10.1038/srep21267
Combined strategies for optimal detection of the contact point in AFM force-indentation curves obtained on thin samples and adherent cells
resolves10.7554/eLife.78823
Viscoelastic properties of suspended cells measured with shear flow deformation cytometry
resolves10.1016/0020-7225(67)90037-7
The contact problem in the linear theory of viscoelasticity when the time dependent contact area has any number of maxima and minima
resolves10.1038/s41586-020-2649-2
Array programming with NumPy
resolves10.1063/1.4881683
AtomicJ: An open source software for analysis of force curves
resolves10.1063/1.2162455
Noninvasive determination of optical lever sensitivity in atomic force microscopy
resolves10.1016/j.actbio.2019.05.023
Nonlinear elasticity of the lung extracellular microenvironment is regulated by macroscale tissue strain
resolves10.1002/jcp.25420
Probing Micromechanical Properties of the Extracellular Matrix of Soft Tissues by Atomic Force Microscopy
resolves10.21105/joss.01700
RHEOS.jl -- A Julia Package for Rheology Data Analysis
resolves10.3390/mi14010182
Determining Spatial Variability of Elastic Properties for Biological Samples Using AFM
resolves10.1115/1.3644020
The Contact Problem for Viscoelastic Bodies
resolves10.1007/s002490050213
Elasticity of normal and cancerous human bladder cells studied by scanning force microscopy
resolves10.1515/9783110640632
Biomedical Methods
resolves10.1515/9783110989380
Biomedical Applications
resolves10.1093/qmath/os-10.1.161
BOUSSINESQ'S PROBLEM FOR A RIGID CONE
resolves10.1103/PhysRevLett.85.880
Scanning Probe-Based Frequency-Dependent Microrheology of Polymer Gels and Biological Cells
resolves10.25080/Majora-92bf1922-00a
Data Structures for Statistical Computing in Python
resolves10.1186/s12859-019-3010-3
nanite: using machine learning to assess the quality of atomic force microscopy-enabled nano-indentation data
resolves10.2478/s11534-011-0096-2
Gwyddion: an open-source software for SPM data analysis
resolves10.5281/zenodo.8145703
lmfit/lmfit-py: 1.2.2
resolves10.1063/1.3100258
Atomic force microscopy spring constant determination in viscous liquids
resolves10.1091/mbc.E19-10-0588
Direct evidence that tumor cells soften when navigating confined spaces
resolves10.1103/PhysRevE.72.021914
Probing mechanical properties of living cells by atomic force microscopy with blunted pyramidal cantilever tips
resolves10.1038/nphys4104
High-frequency microrheology reveals cytoskeleton dynamics in living cells
resolves10.1098/rsob.140046
Atomic force microscopy-based microrheology reveals significant differences in the viscoelastic response between malign and benign cell lines
resolves10.1063/1.4962866
A virtual instrument to standardise the calibration of atomic force microscope cantilevers
resolves10.1063/1.1150021
Calibration of rectangular atomic force microscope cantilevers
resolves10.1063/1.1935133
General scaling law for stiffness measurement of small bodies with applications to the atomic force microscope
resolves10.1063/1.4757398
Spring constant calibration of atomic force microscope cantilevers of arbitrary shape
resolves10.1039/d1nr03894j
The viscoelasticity of adherent cells follows a single power-law with distinct local variations within a single cell and across cell lines
resolves10.1038/s41598-017-05383-0
Standardized Nanomechanical Atomic Force Microscopy Procedure (SNAP) for Measuring Soft and Biological Samples
resolves10.1016/0020-7225(65)90019-4
The relation between load and penetration in the axisymmetric boussinesq problem for a punch of arbitrary profile
resolves10.1016/s0304-3991(00)00077-2
Thermomechanical noise of a free v-shaped cantilever for atomic-force microscopy
resolves10.3389/fphy.2020.00301
One-Step Calibration of AFM in Liquid
resolves10.1115/1.3625192
The Contact Stresses Between a Rigid Indenter and a Viscoelastic Half-Space
resolves10.1115/1.3601188
Contact Problems in the Linear Theory of Viscoelasticity
resolves10.1038/s41592-019-0686-2
SciPy 1.0: fundamental algorithms for scientific computing in Python
resolves10.1039/c6sm00801a
Measuring the viscoelastic creep of soft samples by step response AFM
The 1 reference without a DOI — listed, not checked
no DOI — not checkedPyFMLab (1.0.2).
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