Reference health
Signaling Events Downstream of AHR Activation That Contribute to Toxic Responses: The Functional Role of an AHR-Dependent Long Noncoding RNA ( <i>slincR</i> ) Using the Zebrafish Model
1 of 98 checkable references need attention · checked 2026-09-09
At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.
5 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
References needing attention
does not resolve to a known work10.12688/f1000r.esearch.7035.2
The 97 checked references that resolve
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The transcription factor Sox9 has essential roles in successive steps of the chondrocyte differentiation pathway and is required for expression of
<i>Sox5</i>
and
<i>Sox6</i>
resolves10.1038/nprot.2013.099
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
resolves10.1093/bioinformatics/btu638
HTSeq—a Python framework to work with high-throughput sequencing data
resolves10.1093/toxsci/68.2.403
Tissue-Specific Expression of AHR2, ARNT2, and CYP1A in Zebrafish Embryos and Larvae: Effects of Developmental Stage and 2,3,7,8-Tetrachlorodibenzo-p-dioxin Exposure
resolves10.1093/toxsci/kfl093
Blocking Expression of AHR2 and ARNT1 in Zebrafish Larvae Protects Against Cardiac Toxicity of 2,3,7,8-Tetrachlorodibenzo-p-dioxin
resolves10.7554/eLife.15635
Sox9 and Sox8 protect the adult testis from male-to-female genetic reprogramming and complete degeneration
resolves10.1089/zeb.2015.1232
Facility Design and Health Management Program at the Sinnhuber Aquatic Research Laboratory
resolves10.1615/CritRevEukarGeneExpr.v18.i3.20
The Aryl Hydrocarbon Receptor Complex and the Control of Gene Expression
resolves10.1016/j.ymeth.2013.04.011
The developmental epigenomics toolbox: ChIP-seq and MethylCap-seq profiling of early zebrafish embryos
resolves10.1289/ehp.110-1241197
Cancer risk assessment, indicators, and guidelines for polycyclic aromatic hydrocarbons in the ambient air.
resolves10.1093/toxsci/kft027
TCDD Inhibition of Canonical Wnt Signaling Disrupts Prostatic Bud Formation in Mouse Urogenital Sinus
resolves10.1016/j.aquatox.2015.04.005
Dioxin disrupts cranial cartilage and dermal bone development in zebrafish larvae
resolves10.12688/f1000research.8987.2
From reads to genes to pathways: differential expression analysis of RNA-Seq experiments using Rsubread and the edgeR quasi-likelihood pipeline
resolves10.1007/978-3-319-07212-8_3
Differential Expression Analysis of Complex RNA-seq Experiments Using edgeR
resolves10.1186/s13059-016-0880-9
Evolutionary analysis across mammals reveals distinct classes of long non-coding RNAs
resolves10.1093/toxsci/kfx035
Mechanistic Investigations Into the Developmental Toxicity of Nitrated and Heterocyclic PAHs
resolves10.1002/tera.1420420606
A critical review of the developmental toxicity and teratogenicity of 2,3,7,8‐tetrachlorodibenzo‐p‐dioxin: Recent advances toward understanding the mechanism
resolves10.1289/ehp.001081159
The impact of polycyclic aromatic hydrocarbons and fine particles on pregnancy outcome.
resolves10.1146/annurev.pharmtox.43.100901.135828
Activation of the Aryl Hydrocarbon Receptor by Structurally Diverse Exogenous and Endogenous Chemicals
resolves10.1006/faat.1995.1016
The Importance of Pharmacokinetics in Determining the Relative Potency of 2,3,7,8-Tetrachlorodibenzo-p-dioxin and 2,3,7,8-Tetrachlorodibenzofuran
resolves10.1093/bioinformatics/bti525
BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis
resolves10.1038/nprot.2009.97
Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt
resolves10.1289/ehp.0901070
Prenatal Exposure to Airborne Polycyclic Aromatic Hydrocarbons and Children’s Intelligence at 5 Years of Age in a Prospective Cohort Study in Poland
resolves10.1124/pr.114.009001
The Aryl Hydrocarbon Receptor in Barrier Organ Physiology, Immunology, and Toxicology
resolves10.1074/mcp.M113.035600
Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics
resolves10.1126/science.7732381
Immune System Impairment and Hepatic Fibrosis in Mice Lacking the Dioxin-Binding Ah Receptor
resolves10.1038/ng.722
Continuous cell supply from a Sox9-expressing progenitor zone in adult liver, exocrine pancreas and intestine
resolves10.1371/journal.pone.0193484
AHR2 required for normal behavioral responses and proper development of the skeletal and reproductive systems in zebrafish
resolves10.1124/mol.117.108233
In Vivo Characterization of an AHR-Dependent Long Noncoding RNA Required for Proper Sox9b Expression
resolves10.1016/j.pharmthera.2016.03.009
Advancements in zebrafish applications for 21st century toxicology
resolves10.1007/s00204-017-2068-9
Comparative developmental toxicity of a comprehensive suite of polycyclic aromatic hydrocarbons
resolves10.1371/journal.pone.0029346
AHR2 Mutant Reveals Functional Diversity of Aryl Hydrocarbon Receptors in Zebrafish
resolves10.1093/toxsci/kfv139
Ligand-Specific Transcriptional Mechanisms Underlie Aryl Hydrocarbon Receptor-Mediated Developmental Toxicity of Oxygenated PAHs
resolves10.1093/bioinformatics/btw313
Complex heatmaps reveal patterns and correlations in multidimensional genomic data
resolves10.1016/j.taap.2016.08.013
Phenotypically anchored transcriptome profiling of developmental exposure to the antimicrobial agent, triclosan, reveals hepatotoxicity in embryonic zebrafish
resolves10.1016/j.cotox.2017.02.003
Diversity as opportunity: Insights from 600 million years of AHR evolution
resolves10.1006/taap.1996.8024
Early Life Stage Toxicity of 2,3,7,8-Tetrachlorodibenzo-p-dioxin in Zebrafish (Danio rerio)
resolves10.1371/journal.pone.0009788
A Robust Procedure for Comparing Multiple Means under Heteroscedasticity in Unbalanced Designs
resolves10.1016/j.devcel.2005.02.013
Canonical Wnt/β-Catenin Signaling Prevents Osteoblasts from Differentiating into Chondrocytes
resolves10.1124/mol.113.086413
Sox9b Is Required for Epicardium Formation and Plays a Role in TCDD-Induced Heart Malformation in Zebrafish
resolves10.1038/nature12111
The zebrafish reference genome sequence and its relationship to the human genome
resolves10.1038/srep08022
AhR expression and polymorphisms are associated with risk of coronary arterial disease in Chinese population
resolves10.1186/1471-2105-15-182
Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads
resolves10.1016/j.gendis.2014.09.004
The versatile functions of Sox9 in development, stem cells, and human diseases
resolves10.1186/gb-2013-14-4-r36
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
resolves10.1016/j.ntt.2016.10.006
Developmental benzo[a]pyrene (B[a]P) exposure impacts larval behavior and impairs adult learning in zebrafish
resolves10.1073/pnas.190256997
Portosystemic shunting and persistent fetal vascular structures in aryl hydrocarbon receptor-deficient mice
resolves10.1186/gb-2009-10-3-r25
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
resolves10.1016/j.tcb.2014.06.003
Physiological roles of long noncoding RNAs: insight from knockout mice
resolves10.1093/toxsci/kfg218
Region-Specific Inhibition of Prostatic Epithelial Bud Formation in the Urogenital Sinus of C57BL/6 Mice Exposed in Utero to 2,3,7,8-Tetrachlorodibenzo-p-dioxin
resolves10.1006/meth.2001.1262
Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method
resolves10.1007/978-1-4939-3578-9_19
It’s DE-licious: A Recipe for Differential Expression Analyses of RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR
resolves10.1177/2211068211432197
Automated Zebrafish Chorion Removal and Single Embryo Placement: Optimizing Throughput of Zebrafish Developmental Toxicity Screens
resolves10.1096/fj.08-109009
Crosstalk between AHR and Wnt signaling through R‐Spondin1 impairs tissue regeneration in zebrafish
resolves10.1093/nar/gks042
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
resolves10.1038/s41598-018-28596-3
Transcription factor profiling identifies Sox9 as regulator of proliferation and differentiation in corneal epithelial stem/progenitor cells
resolves10.1038/nature10491
An endogenous tumour-promoting ligand of the human aryl hydrocarbon receptor
resolves10.1158/1055-9965.EPI-04-0457
DNA Damage from Polycyclic Aromatic Hydrocarbons Measured by Benzo[<i>a</i>]pyrene-DNA Adducts in Mothers and Newborns from Northern Manhattan, The World Trade Center Area, Poland, and China
resolves10.1016/j.molmed.2010.12.001
Understanding the role of SOX9 in acquired diseases: lessons from development
resolves10.1093/bioinformatics/btp616
<tt>edgeR</tt>
: a Bioconductor package for differential expression analysis of digital gene expression data
resolves10.1186/gb-2010-11-3-r25
A scaling normalization method for differential expression analysis of RNA-seq data
resolves10.1093/bioinformatics/btm453
Moderated statistical tests for assessing differences in tag abundance
resolves10.1093/biostatistics/kxm030
Small-sample estimation of negative binomial dispersion, with applications to SAGE data
resolves10.3390/ijms151017852
Intersection of AHR and Wnt Signaling in Development, Health, and Disease
resolves10.1021/es400857z
Global Atmospheric Emissions of Polycyclic Aromatic Hydrocarbons from 1960 to 2008 and Future Predictions
resolves10.1289/ehp.1103744
Maternal Exposure to Polycyclic Aromatic Hydrocarbons and 5’-CpG Methylation of Interferon-γ in Cord White Blood Cells
resolves10.1016/S0167-4781(98)00252-8
Cloning and characterization of the zebrafish (Danio rerio) aryl hydrocarbon receptor
resolves10.1016/j.reprotox.2016.05.015
Optimizing multi-dimensional high throughput screening using zebrafish
resolves10.1073/pnas.0404379101
Gestational exposure of
<i>Ahr</i>
and
<i>Arnt</i>
hypomorphs to dioxin rescues vascular development
resolves10.1080/10520290701333558
A two-color acid-free cartilage and bone stain for zebrafish larvae
resolves10.1016/j.molcel.2014.07.012
The Long Noncoding RNAs NEAT1 and MALAT1 Bind Active Chromatin Sites
resolves10.1016/j.taap.2015.02.014
Combination effects of AHR agonists and Wnt/β-catenin modulators in zebrafish embryos: Implications for physiological and toxicological AHR functions
resolves10.1124/mol.108.050435
Aryl Hydrocarbon Receptor-Mediated Down-Regulation of Sox9b Causes Jaw Malformation in Zebrafish Embryos
resolves10.1038/s41419-018-0542-9
Activation of AhR with nuclear IKKα regulates cancer stem-like properties in the occurrence of radioresistance
resolves10.1242/dev.01674
A pair of Sox: distinct and overlapping functions of zebrafish sox9 co-orthologs in craniofacial and pectoral fin development
resolves10.1158/1078-0432.CCR-17-0396
Activation of the Aryl Hydrocarbon Receptor Leads to Resistance to EGFR TKIs in Non–Small Cell Lung Cancer by Activating Src-mediated Bypass Signaling
The 5 references without a DOI — listed, not checked
no DOI — not checkedFastQC: A Quality Control Tool for High Throughput Sequence Data. Version 0.11.3
no DOI — not checkedAn R Companion to Applied Regression
no DOI — not checkedToxicity Testing in the 21st Century: A Vision and a Strategy
no DOI — not checkedThe Zebrafish Book. A Guide for the Laboratory Use of Zebrafish (Danio rerio)
no DOI — not checkedThe Zebrafish Book. A Guide for the Laboratory Use of Zebrafish (Danio rerio)
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