Reference health

Computing Workflows for Biologists: A Roadmap

https://doi.org/10.1371/journal.pbio.1002303
CiteStamped reference-health badge
10/10 checkable references clean · checked 2026-07-14

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a publisher retraction, withdrawal, or removal notice.

5 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

The 10 checked references that resolve
resolves10.1371/journal.pcbi.1000424
A Quick Guide to Organizing Computational Biology Projects
resolves10.1126/science.1213847
Reproducible Research in Computational Science
resolves10.1371/journal.pcbi.1003285
Ten Simple Rules for Reproducible Computational Research
resolves10.1038/nbt.2740
So you want to be a computational biologist?
resolves10.1371/journal.pcbi.1000589
A Quick Guide for Developing Effective Bioinformatics Programming Skills
resolves10.1371/journal.pbio.1001745
Best Practices for Scientific Computing
resolves10.2218/ijdc.v10i1.351
Data Carpentry: Workshops to Increase Data Literacy for Researchers
resolves10.1371/journal.pone.0027310
Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies
resolves10.1371/journal.pcbi.1003506
Ten Simple Rules for Effective Computational Research
resolves10.1186/1471-2105-15-S14-S7
Community-driven development for computational biology at Sprints, Hackathons and Codefests
The 5 references without a DOI — listed, not checked
no DOI — not checkedMetabolomics
no DOI — not checkedEMBL Australia. BRAEMBL community survey report– 2013. 2013. <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://braembl.org.au/news/braembl-community-survey-report-2013" xlink:type="simple">http://braembl.org.au/news/braembl-community-survey-report-2013</ext-link>
no DOI — not checkedBrown CT, Scott C, Crusoe MR. Comparing and evaluating assembly with graph alignment. In: Living In an Ivory Basement. 2015. Cited 19 Aug 2015. <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://ivory.idyll.org/blog/2015-wok-evaluate.html" xlink:type="simple">http://ivory.idyll.org/blog/2015-wok-evaluate.html</ext-link>
no DOI — not checkedGentzkow M, Shapiro JM. Code and Data for the Social Sciences : A Practitioner’s Guide. 2014; <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="https://people.stanford.edu/gentzkow/sites/default/files/codeanddata.xhtml" xlink:type="simple">https://people.stanford.edu/gentzkow/sites/default/files/codeanddata.xhtml</ext-link>
no DOI — not checkedPetre M, Wilson G. Code Review For and By Scientists. arXiv Prepr arXiv14075648. 2014; 4. <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://arxiv.org/abs/1407.5648" xlink:type="simple">http://arxiv.org/abs/1407.5648</ext-link>
What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a publisher retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

checked 2026-07-14 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record

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