Reference health
Hyperexpansion of RNA Bacteriophage Diversity
42/42 checkable references clean · checked 2026-08-29
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
7 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 42 checked references that resolve
resolves10.1126/science.1198469
Induction of Colonic Regulatory T Cells by Indigenous
<i>Clostridium</i>
Species
resolves10.1016/j.chom.2007.06.010
Host-Mediated Inflammation Disrupts the Intestinal Microbiota and Promotes the Overgrowth of Enterobacteriaceae
resolves10.1371/journal.pbio.0050244
Salmonella enterica Serovar Typhimurium Exploits Inflammation to Compete with the Intestinal Microbiota
resolves10.1038/nature13459
Viral tagging reveals discrete populations in Synechococcus viral genome sequence space
resolves10.1128/JB.00929-12
Rethinking the Evolution of Single-Stranded RNA (ssRNA) Bacteriophages Based on Genomic Sequences and Characterizations of Two R-Plasmid-Dependent ssRNA Phages, C-1 and Hgal1
resolves10.1099/0022-1317-64-9-2039
Bacteriophage Distribution in Human Faeces: Continuous Survey of Healthy Subjects and Patients with Internal and Leukaemic Diseases
resolves10.1128/AEM.41.5.1139-1143.1981
Distribution of ribonucleic acid coliphages in raw sewage from treatment plants in Japan
resolves10.1128/AEM.35.6.995-1002.1978
Distribution of ribonucleic acid coliphages in south and east Asia
resolves10.1146/annurev-micro-092412-155642
Experimental Approaches for Defining Functional Roles of Microbes in the Human Gut
resolves10.1128/JB.185.20.6220-6223.2003
Metagenomic Analyses of an Uncultured Viral Community from Human Feces
resolves10.1101/gr.122705.111
The human gut virome: Inter-individual variation and dynamic response to diet
resolves10.1038/nrmicro2853
Going viral: next-generation sequencing applied to phage populations in the human gut
resolves10.1038/nature13786
Biogeography and individuality shape function in the human skin metagenome
resolves10.1016/j.cell.2013.10.034
Temporal Response of the Human Virome to Immunosuppression and Antiviral Therapy
resolves10.1038/ncomms5498
A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes
resolves10.1016/j.cell.2012.09.024
Pathogenic Simian Immunodeficiency Virus Infection Is Associated with Expansion of the Enteric Virome
resolves10.1073/pnas.1003015107
Structure of the Qβ replicase, an RNA-dependent RNA polymerase consisting of viral and host proteins
resolves10.1007/s00705-004-0440-6
Molecular criteria for genus and species discrimination within the family Potyviridae
resolves10.1128/AEM.01065-07
New Genera of RNA Viruses in Subtropical Seawater, Inferred from Polymerase Gene Sequences
resolves10.1128/JB.184.17.4891-4905.2002
Imbroglios of Viral Taxonomy: Genetic Exchange and Failings of Phenetic Approaches
resolves10.1016/j.resmic.2008.03.005
Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools
resolves10.1128/JVI.01308-09
Gene Mapping and Phylogenetic Analysis of the Complete Genome from 30 Single-Stranded RNA Male-Specific Coliphages (Family
<i>Leviviridae</i>
)
resolves10.1016/j.virol.2014.01.018
Discovery of rosavirus 2, a novel variant of a rodent-associated picornavirus, in children from The Gambia
resolves10.1371/journal.pone.0078470
Identification of Novel Viruses Using VirusHunter -- an Automated Data Analysis Pipeline
resolves10.1093/bioinformatics/bts174
IDBA-UD: a
<i>de novo</i>
assembler for single-cell and metagenomic sequencing data with highly uneven depth
resolves10.1093/oxfordjournals.molbev.a026334
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
The 7 references without a DOI — listed, not checked
no DOI — not checkedDraft Genome Sequences of Leviviridae RNA Phages EC and MB Recovered from San Francisco Wastewater
no DOI — not checkedRapid evolution of the human gut virome
no DOI — not checkedViral dark matter and virus-host interactions resolved from publicly available microbial genomes
no DOI — not checkedProtective efficacy of adenovirus-protein vaccines against SIV challenges in rhesus monkeys
no DOI — not checkedNarnaviridae
no DOI — not checkedThe Evolution and Emergence of RNA Viruses
no DOI — not checkedBreathing air to save energy—new insights into the ecophysiological role of high-affinity [NiFe]-hydrogenase in Streptomyces avermitilis
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