Reference health
Genotyping-by-Sequencing in a Species Complex of Australian Hummock Grasses (Triodia): Methodological Insights and Phylogenetic Resolution
63/63 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
11 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 63 checked references that resolve
resolves10.1016/j.ympev.2011.12.007
Applications of next-generation sequencing to phylogeography and phylogenetics
resolves10.1093/molbev/mss086
Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis
resolves10.1093/sysbio/syu046
Unforeseen Consequences of Excluding Missing Data from Next-Generation Sequences: Simulation Study of RAD Sequences
resolves10.1093/sysbio/syv053
Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies
resolves10.1093/bioinformatics/btv234
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
resolves10.1093/sysbio/syt032
Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)
resolves10.1016/j.ympev.2014.08.023
Effectiveness of phylogenomic data and coalescent species-tree methods for resolving difficult nodes in the phylogeny of advanced snakes (Serpentes: Caenophidia)
resolves10.1093/sysbio/syv029
The Challenges of Resolving a Rapid, Recent Radiation: Empirical and Simulated Phylogenomics of Philippine Shrews
resolves10.1093/gbe/evv026
Phylogenomics of Phrynosomatid Lizards: Conflicting Signals from Sequence Capture versus Restriction Site Associated DNA Sequencing
resolves10.1111/mec.13008
The evolutionary history of Afrocanarian blue tits inferred from genomewide <scp>SNP</scp>s
resolves10.1016/j.ympev.2015.10.027
Implementing and testing the multispecies coalescent model: A valuable paradigm for phylogenomics
resolves10.1371/journal.pone.0019379
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
resolves10.1371/journal.pone.0003376
Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
resolves10.1111/mec.12845
Population genomic variation reveals roles of history, adaptation and ploidy in switchgrass
resolves10.1371/journal.pgen.1003215
Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol
resolves10.1093/bioinformatics/btm308
TASSEL: software for association mapping of complex traits in diverse samples
resolves10.1534/g3.111.000240
<i>Stacks</i>: Building and Genotyping Loci <i>De Novo</i> From Short-Read Sequences
resolves10.1111/mec.12992
Genic rather than genome‐wide differences between sexually deceptive<i><scp>O</scp>phrys</i>orchids with different pollinators
resolves10.1093/bioinformatics/btu121
PyRAD: assembly of
<i>de novo</i>
RADseq loci for phylogenetic analyses
resolves10.1016/j.ympev.2014.06.026
Genotyping-by-sequencing as a tool to infer phylogeny and ancestral hybridization: A case study in Carex (Cyperaceae)
resolves10.1111/1755-0998.12291
Restriction site‐associated <scp>DNA</scp> sequencing, genotyping error estimation and <i>de novo</i> assembly optimization for population genetic inference
resolves10.1111/mec.12343
Adaptive evolution during an ongoing range expansion: the invasive bank vole (<i><scp>M</scp>yodes glareolus</i>) in <scp>I</scp>reland
resolves10.1111/evo.12457
GENOMIC AND MORPHOLOGICAL ANALYSIS OF A SEMIPERMEABLE AVIAN HYBRID ZONE SUGGESTS ASYMMETRICAL INTROGRESSION OF A SEXUAL SIGNAL
resolves10.1534/g3.114.010942
Genetic Diversity Analysis of Highly Incomplete SNP Genotype Data with Imputations: An Empirical Assessment
resolves10.1038/nrg3012
Genome-wide genetic marker discovery and genotyping using next-generation sequencing
resolves10.1111/mec.12276
<scp>RAD</scp>seq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling
resolves10.1186/1471-2148-10-302
A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
resolves10.1071/SB96012
A Revision of
<i>Triodia</i>
including
<i>Plectrachne</i>
(Poaceae, Eragrostideae, Triodiinae)
resolves10.1071/ZO9830361
A Taxonomic Appraisal of the Genus Ningaui Archer (Marsupialia: Dasyuridae), including Description of a New Species
resolves10.1890/06-1991.1
CAUSES OF HABITAT DIVERGENCE IN TWO SPECIES OF AGAMID LIZARDS IN ARID CENTRAL AUSTRALIA
resolves10.7751/telopea20116004
Two new species of Triodia (Poaceae: Triodieae) from the Kimberley region of Western Australia
resolves10.1071/SB10044
A taxonomic review of Triodia bunicola and T. scariosa (Poaceae: Chloridoideae), based on morphological and molecular data
resolves10.11646/phytotaxa.230.3.9
Australian spinifex grasses: new names in Triodia for Monodia and Symplectrodia
resolves10.1016/j.ympev.2016.05.014
Untangling a species complex of arid zone grasses (Triodia) reveals patterns congruent with co-occurring animals
resolves10.1071/BT09138
Polyploidy and possible implications for the evolutionary history of some Australian Danthonieae
resolves10.1093/aob/mci019
The Origin, Evolution and Proposed Stabilization of the Terms 'Genome Size' and 'C-Value' to Describe Nuclear DNA Contents
resolves10.1093/bioinformatics/btu033
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
resolves10.1016/j.ympev.2014.01.030
Limitations of locally sampled characters in phylogenetic analyses of sparse supermatrices
resolves10.1080/10635150390235520
A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood
resolves10.1093/molbev/msn043
Calculating Bootstrap Probabilities of Phylogeny Using Multilocus Sequence Data
resolves10.1155/2014/675158
Defining Loci in Restriction-Based Reduced Representation Genomic Data from Nonmodel Species: Sources of Bias and Diagnostics for Optimal Clustering
resolves10.1080/10635150601146041
Inconsistency of Phylogenetic Estimates from Concatenated Data under Coalescence
resolves10.1093/sysbio/syv058
How Should Genes and Taxa be Sampled for Phylogenomic Analyses with Missing Data? An Empirical Study in Iguanian Lizards
The 11 references without a DOI — listed, not checked
no DOI — not checkedPhylogenetic analysis of RAD-seq data: examining the influence of gene genealogy conflict on analysis of concatenated data
no DOI — not checkedThe Vegetation of Australia
no DOI — not checked<italic>Triodia caelestialis</italic> (Triodieae: Chloridoideae: Poaceae), a new species from the central Kimberley, Western Australia
no DOI — not checkedFlora of Australia
no DOI — not checkedStandardising informal names in Australian publications
no DOI — not checkedHole-filled seamless SRTM data V4
no DOI — not checkedR: A language and environment for statistical computing
no DOI — not checkedPython Software Foundation. Python Language Reference, version 2.7 [Internet]. 2016;Available from: <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="https://docs.python.org/2.7/" xlink:type="simple">https://docs.python.org/2.7/</ext-link>
no DOI — not checkedRambaut A. FigTree [Internet]. 2014;Available from: <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://tree.bio.ed.ac.uk/software/figtree/" xlink:type="simple">http://tree.bio.ed.ac.uk/software/figtree/</ext-link>
no DOI — not checkedRambaut A, Suchard M, Xie D, Drummond A. Tracer [Internet]. 2014;Available from: <ext-link xmlns:xlink="http://www.w3.org/1999/xlink" ext-link-type="uri" xlink:href="http://beast.bio.ed.ac.uk/Tracer" xlink:type="simple">http://beast.bio.ed.ac.uk/Tracer</ext-link>
no DOI — not checkedPAUP*: phylogenetic analysis using parsimony (*and other methods)
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