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A workflow for the relative quantification of multiple fish species from oceanic water samples using environmental DNA (eDNA) to support large-scale fishery surveys

https://doi.org/10.1371/journal.pone.0257773
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27/27 checkable references clean · checked 2026-07-22

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

11 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

The 27 checked references that resolve
resolves10.1111/1755-0998.12522
Estimating fish abundance and biomass from <scp>eDNA</scp> concentrations: variability among capture methods and environmental conditions
resolves10.1016/j.biocon.2019.07.003
Environmental DNA provides quantitative estimates of a threatened salmon species
resolves10.1371/journal.pone.0165252
Environmental DNA from Seawater Samples Correlate with Trawl Catches of Subarctic, Deepwater Fishes
resolves10.1111/faf.12286
The sceptical optimist: challenges and perspectives for the application of environmental <scp>DNA</scp> in marine fisheries
resolves10.1016/j.jembe.2018.09.004
Species-specific detection and quantification of environmental DNA from marine fishes in the Baltic Sea
resolves10.1371/journal.pone.0149786
Environmental DNA as a ‘Snapshot’ of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan
resolves10.1016/j.fishres.2020.105813
Assessment of fishery resources using environmental DNA: The large yellow croaker (Larimichthys crocea) in the East China Sea
resolves10.1111/1755-0998.12108
Preservation of RNA and DNA from mammal samples under field conditions
resolves10.1111/1755-0998.12281
The room temperature preservation of filtered environmental <scp>DNA</scp> samples and assimilation into a phenol–chloroform–isoamyl alcohol <scp>DNA</scp> extraction
resolves10.1016/j.dsr2.2017.09.008
Exploring deep-water coral communities using environmental DNA
resolves10.1098/rsos.180537
Water, water everywhere: environmental DNA can unlock population structure in elusive marine species
resolves10.1002/ece3.4843
Species‐level biodiversity assessment using marine environmental DNA metabarcoding requires protocol optimization and standardization
resolves10.2166/wh.2018.108
Assessing high-throughput environmental DNA extraction methods for meta-barcode characterization of aquatic microbial communities
resolves10.1038/s42003-018-0192-6
Persistence of environmental DNA in marine systems
resolves10.3389/fmars.2017.00314
Evaluation of Filtration and DNA Extraction Methods for Environmental DNA Biodiversity Assessments across Multiple Trophic Levels
resolves10.1111/1365-2664.13485
eDNA surveys to detect species at very low densities: A case study of European carp eradication in Tasmania, Australia
resolves10.1007/s00227-017-3141-x
Development of a sensitive detection method to survey pelagic biodiversity using eDNA and quantitative PCR: a case study of devil ray at seamounts
resolves10.2144/96215pf01
Improved Nucleic Acid Organic Extraction Through Use of a Unique Gel Barrier Material
resolves10.1038/srep22908
In silico assessment of primers for eDNA studies using PrimerTree and application to characterize the biodiversity surrounding the Cuyahoga River
resolves10.1093/nar/gks1195
GenBank
resolves10.1016/j.mcp.2004.07.006
Development of a novel internal positive control for Taqman® based assays
resolves10.2144/btn-2018-2000
Using synthetic oligonucleotides as standards in probe-based qPCR
resolves10.2144/btn-2018-0034
Development of a Universal Internal Positive Control
resolves10.1093/nar/21.3.781
Silicone lubricant enhances recovery of nucleic acids after phenol-chloroform extraction
resolves10.1371/journal.pone.0179251
Methods to maximise recovery of environmental DNA from water samples
resolves10.1038/s42003-019-0696-8
Environmental DNA concentrations are correlated with regional biomass of Atlantic cod in oceanic waters
resolves10.1111/1755-0998.12978
Intraspecific DNA contamination distorts subtle population structure in a marine fish: Decontamination of herring samples before restriction‐site associated sequencing and its effects on population genetic statistics
The 11 references without a DOI — listed, not checked
no DOI — not checkedTrawl and eDNA assessment of marine fish diversity, seasonality, and relative abundance in coastal New Jersey, USA.
no DOI — not checkedUse of "lysis buffer" in DNA isolation and its implications for museum collections.
no DOI — not checkedDevelopment of species-specific eDNA-based test systems for monitoring of non-indigenous species in Danish marine waters: NIVA Denmark Water Research
no DOI — not checkedpone.0257773.ref021
no DOI — not checkedDesignation of Critical Habitat for the Southern Distinct Population Segment of Eulachon Section 4(b)(2) Report.
no DOI — not checkedMolecular cloning: a laboratory manual
no DOI — not checkedpone.0257773.ref026
no DOI — not checkedpone.0257773.ref031
no DOI — not checkedDevelopment of a quantitative PCR assay for detection of redside shiner (Richardsonius balteatus) from environmental DNA
no DOI — not checkedpone.0257773.ref036
no DOI — not checkedThe 2019 Joint U. S.–Canada Integrated Ecosystem and Pacific Hake Acoustic-Trawl Survey: Cruise Report SH-19-06
What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

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