Reference health

Kindel: indel-aware consensus for nucleotide sequence alignments

https://doi.org/10.21105/joss.00282
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3/3 checkable references clean · checked 2026-07-22

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

1 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

The 3 checked references that resolve
resolves10.1093/bioinformatics/btp352
The Sequence Alignment/Map format and SAMtools
resolves10.1093/bioinformatics/btp324
Fast and accurate short read alignment with Burrows–Wheeler transform
resolves10.1093/bioinformatics/btu146
Lacking alignments? The next-generation sequencing mapper segemehl revisited
The 1 reference without a DOI — listed, not checked
no DOI — not checkedarXiv, 1605.09070, Břinda, Karel and Boeva, Valentina and Kucherov, Gregory, 1605.09070, 1-21, Dynamic read mapping and online consensus calling for better variant detection, http://arxiv.org/abs/1605.09070, 2016
What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

checked 2026-07-22 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record

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