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Low Quality Cells Should Be Removed from Single-Cell RNA-Seq Data Analysis

10/10 checkable references clean · checked 2026-08-19

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

1 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

The 10 checked references that resolve

resolves10.1016/j.celrep.2017.10.030

Single-Cell RNA-Seq Analysis of Infiltrating Neoplastic Cells at the Migrating Front of Human Glioblastoma

resolves10.1186/s13059-016-0888-1

Classification of low quality cells from single-cell RNA-seq data

resolves10.1038/nmeth.3317

HISAT: a fast spliced aligner with low memory requirements

resolves10.1186/s13059-014-0550-8

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

resolves10.1038/nbt.3122

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

resolves10.1038/nmeth.2639

Smart-seq2 for sensitive full-length transcriptome profiling in single cells

resolves10.1101/134130

Impact of sequencing depth and read length on single cell RNA sequencing data: lessons from T cells

resolves10.1038/nrg3833

Computational and analytical challenges in single-cell transcriptomics

resolves10.1126/science.aah4573

Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

resolves10.1038/nmeth.2694

Quantitative assessment of single-cell RNA-sequencing methods

The 1 reference without a DOI — listed, not checked

no DOI — not checkedSingle-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors

What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

checked 2026-08-19 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record

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