Reference health
A 3D Atlas of Hematopoietic Stem and Progenitor Cell Expansion by Multi-Dimensional RNA-Seq Analysis
33/33 checkable references clean · checked 2026-10-12
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
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The 33 checked references that resolve
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Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells
resolves10.1038/nbt.4096
Integrating single-cell transcriptomic data across different conditions, technologies, and species
resolves10.1038/nprot.2017.003
Spatial transcriptomic analysis of cryosectioned tissue samples with Geo-seq
resolves10.1016/j.ydbio.2006.08.020
Global analysis of hematopoietic and vascular endothelial gene expression by tissue specific microarray profiling in zebrafish
resolves10.1016/j.devcel.2014.08.014
S1P-Yap1 Signaling Regulates Endoderm Formation Required for Cardiac Precursor Cell Migration in Zebrafish
resolves10.1186/1471-213x-7-42
The zebrafish lysozyme C promoter drives myeloid-specific expression in transgenic fish
resolves10.1093/nar/gkn923
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists
resolves10.1038/nprot.2008.211
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
resolves10.1093/bioinformatics/btv342
oposSOM: R-package for high-dimensional portraying of genome-wide expression landscapes on bioconductor
resolves10.1182/blood-2005-01-0179
Analysis of thrombocyte development in CD41-GFP transgenic zebrafish
resolves10.1016/j.immuni.2016.03.008
Macrophages Mediate the Repair of Brain Vascular Rupture through Direct Physical Adhesion and Mechanical Traction
resolves10.1186/s13059-014-0550-8
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
resolves10.1126/science.aaf2679
Injury-induced
<i>ctgfa</i>
directs glial bridging and spinal cord regeneration in zebrafish
resolves10.1038/ncomms9146
Chamber identity programs drive early functional partitioning of the heart
resolves10.1016/j.devcel.2016.02.020
Spatial Transcriptome for the Molecular Annotation of Lineage Fates and Cell Identity in Mid-gastrula Mouse Embryo
resolves10.1016/j.cell.2016.03.023
Single-Cell RNA-Seq Reveals Lineage and X Chromosome Dynamics in Human Preimplantation Embryos
resolves10.1038/ncomms10706
Correction: Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human
resolves10.1038/ng0617-969c
Correction: Corrigendum: SMCHD1 mutations associated with a rare muscular dystrophy can also cause isolated arhinia and Bosma arhinia microphthalmia syndrome
resolves10.1038/ng.3743
SMCHD1 mutations associated with a rare muscular dystrophy can also cause isolated arhinia and Bosma arhinia microphthalmia syndrome
resolves10.1101/gr.209601.116
UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy
resolves10.1093/nar/gku1003
STRING v10: protein–protein interaction networks, integrated over the tree of life
resolves10.1038/ncomms15599
Single-cell entropy for accurate estimation of differentiation potency from a cell’s transcriptome
resolves10.1038/nbt.2859
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
resolves10.1182/blood-2011-05-353235
A blood flow–dependent klf2a-NO signaling cascade is required for stabilization of hematopoietic stem cell programming in zebrafish embryos
resolves10.1038/cr.2008.60
Gfi1.1 regulates hematopoietic lineage differentiation during zebrafish embryogenesis
resolves10.1016/j.ydbio.2015.05.015
Genome-wide analysis of the zebrafish Klf family identifies two genes important for erythroid maturation
resolves10.1038/cr.2015.109
G protein-coupled receptor 183 facilitates endothelial-to-hematopoietic transition via Notch1 inhibition
resolves10.1016/j.celrep.2013.07.010
Integrating Genomic, Epigenomic, and Transcriptomic Features Reveals Modular Signatures Underlying Poor Prognosis in Ovarian Cancer
The 20 references without a DOI — listed, not checked
no DOI — not checkedComputational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells
no DOI — not checkedA draft network of ligand-receptor-mediated multicellular signalling in human
no DOI — not checkedThe dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
no DOI — not checked1 regulates hematopoietic lineage differentiation during zebrafish embryogenesis
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