Reference health

Computational Intelligence Tools to Study Molecular Interactions for Drug Design

https://doi.org/10.2139/ssrn.3358246
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37/37 checkable references clean · checked 2026-08-29

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

3 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.

The 37 checked references that resolve
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pyDock: Electrostatics and desolvation for effective scoring of rigid‐body protein–protein docking
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DOCK 4.0: Search strategies for automated molecular docking of flexible molecule databases
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Glide:  A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy
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resolves10.1006/jmbi.1999.3371
Knowledge-based scoring function to predict protein-ligand interactions
resolves10.1007/s12551-013-0130-2
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resolves10.1016/j.gene.2008.06.014
Using protein binding site prediction to improve protein docking
resolves10.1017/s0033583500001566
Van der Waals forces in biological systems
resolves10.1038/nrd1549
Docking and scoring in virtual screening for drug discovery: methods and applications
resolves10.1038/nprot.2016.169
The ClusPro web server for protein–protein docking
resolves10.1021/ci200227u
LigPlot+: Multiple Ligand–Protein Interaction Diagrams for Drug Discovery
resolves10.1201/9781420015737
In Silico Technologies in Drug Target Identification and Validation
resolves10.1093/nar/gkl114
TarFisDock: a web server for identifying drug targets with docking approach
resolves10.1002/pro.5560070411
Flexible ligand docking using conformational ensembles
resolves10.1007/s10822-012-9584-8
FRED and HYBRID docking performance on standardized datasets
resolves10.1007/s12647-013-0086-5
Interaction Studies of Anticancer Drug Lomustine with Calf Thymus DNA using Surface Enhanced Raman Spectroscopy
resolves10.1002/jcc.21256
AutoDock4 and AutoDockTools4: Automated docking with selective receptor flexibility
resolves10.1021/jm070593p
A Flexible Approach to Induced Fit Docking
resolves10.1371/journal.pone.0024657
Accelerating Protein Docking in ZDOCK Using an Advanced 3D Convolution Library
resolves10.1021/ci6004299
Validation Studies of the Site-Directed Docking Program LibDock
resolves10.1006/jmbi.1996.0477
A Fast Flexible Docking Method using an Incremental Construction Algorithm
resolves10.1002/jcc.23304
DOT2: Macromolecular docking with improved biophysical models
resolves10.1021/ja508258t
Structural, Kinetic, and Docking Studies of Artificial Imine Reductases Based on Biotin–Streptavidin Technology: An Induced Lock-and-Key Hypothesis
resolves10.1093/nar/gki1008
Molecular flexibility in ab initio drug docking to DNA: binding-site and binding-mode transitions in all-atom Monte Carlo simulations
resolves10.1016/s1367-5931(02)00339-3
Lead discovery using molecular docking
resolves10.1093/nar/gkl206
GRAMM-X public web server for protein-protein docking
resolves10.1002/jcc.21334
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
resolves10.1016/s1093-3263(02)00164-x
LigandFit: a novel method for the shape-directed rapid docking of ligands to protein active sites
resolves10.1002/prot.10465
Improved protein–ligand docking using GOLD
resolves10.1023/A:1016357811882
Further development and validation of empirical scoring functions for structure-based binding affinity prediction
resolves10.1107/s0907444911049791
Conventions and workflows for using <i>Situs</i>
resolves10.1002/jcc.10306
Detailed analysis of grid‐based molecular docking: A case study of CDOCKER—A CHARMm‐based MD docking algorithm
resolves10.1093/nar/gkx407
HDOCK: a web server for protein–protein and protein–DNA/RNA docking based on a hybrid strategy
The 3 references without a DOI — listed, not checked
no DOI — not checkedref19
no DOI — not checkedA Review on Molecular Docking: Novel Tool in Drug Design and Analysis
no DOI — not checkedMolecular Docking: A Structure-Based Drug Designing Approach
What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

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