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Multiple Modes of Regulation Control Dynamic Transcription Patterns During the Mitosis-G1 Transition

https://doi.org/10.2139/ssrn.3867721
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Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

The 90 checked references that resolve
resolves10.1038/s41556-019-0406-2
A chromosome folding intermediate at the condensin-to-cohesin transition during telophase
resolves10.1016/j.molcel.2020.02.014
NELF Regulates a Promoter-Proximal Step Distinct from RNA Pol II Pause-Release
resolves10.1038/sj.emboj.7600481
The E2F family: specific functions and overlapping interests
resolves10.1093/nar/gkp335
MEME SUITE: tools for motif discovery and searching
resolves10.1016/j.celrep.2019.03.057
Interrogating Histone Acetylation and BRD4 as Mitotic Bookmarks of Transcription
resolves10.1093/emboj/16.20.6250
Nuclear translocation and carboxyl‐terminal domain phosphorylation of RNA polymerase II delineate the two phases of zygotic gene activation in mammalian embryos
resolves10.1038/35030148
A chemical switch for inhibitor-sensitive alleles of any protein kinase
resolves10.1038/nmeth.2688
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
resolves10.1038/nature22063
Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl
resolves10.1128/mcb.00181-18
Heat Shock Causes a Reversible Increase in RNA Polymerase II Occupancy Downstream of mRNA Genes, Consistent with a Global Loss in Transcriptional Termination
resolves10.1186/gb-2013-14-9-r98
The non-coding snRNA 7SKcontrols transcriptional termination, poising, and bidirectionality in embryonic stem cells
resolves10.1038/ng.3142
Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
resolves10.1038/nmeth.3329
Identification of active transcriptional regulatory elements from GRO-seq data
resolves10.1101/gad.316810.118
Dynamic turnover of paused Pol II complexes at human promoters
resolves10.1126/science.6283640
Active Genes Are Sensitive to Deoxyribonuclease I During Metaphase
resolves10.1038/nrg2847
Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation
resolves10.1093/hmg/ddt133
Chemical genetic analyses of quantitative changes in Cdk1 activity during the human cell cycle
resolves10.1016/0092-8674(82)90019-8
Propagation of globin DNAase i-hypersensitive sites in absence of factors required for induction: A possible mechanism for determination
resolves10.1016/j.cell.2007.05.042
A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells
resolves10.1186/gb-2013-14-9-133
Runaway transcription
resolves10.1016/j.cell.2011.03.042
A Rapid, Extensive, and Transient Transcriptional Response to Estrogen Signaling in Breast Cancer Cells
resolves10.1016/j.cell.2018.07.047
Transcription Elongation Can Affect Genome 3D Structure
resolves10.1101/gad.309351.117
Widespread transcriptional pausing and elongation control at enhancers
resolves10.1006/meth.1996.0412
Ligation-Mediated PCR for Chromatin-Structure Analysis of Interphase and Metaphase Chromatin
resolves10.1101/638775
Resolving the 3D landscape of transcription-linked mammalian chromatin folding
resolves10.1101/gad.280859.116
A hyperactive transcriptional state marks genome reactivation at the mitosis–G1 transition
resolves10.1101/gr.180646.114
Genome accessibility is widely preserved and locally modulated during mitosis
resolves10.1101/gr.230300.117
Study of mitotic chromatin supports a model of bookmarking by histone modifications and reveals nucleosome deposition patterns
resolves10.1016/s1097-2765(04)00234-5
Involvement of Transcription Termination Factor 2 in Mitotic Repression of Transcription Elongation
resolves10.7554/elife.02407.025
Author response: Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons
resolves10.7554/elife.02407.024
Decision letter: Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons
resolves10.1016/j.cell.2012.06.038
Tissue-Specific Mitotic Bookmarking by Hematopoietic Transcription Factor GATA1
resolves10.1101/gad.335794.119
Dynamic regulation of histone modifications and long-range chromosomal interactions during postmitotic transcriptional reactivation
resolves10.1016/j.molcel.2010.08.026
H2A.Z Maintenance during Mitosis Reveals Nucleosome Shifting on Mitotically Silenced Genes
resolves10.1101/gr.229102
The Human Genome Browser at UCSC
resolves10.1016/j.celrep.2015.03.048
SF3B1 Association with Chromatin Determines Splicing Outcomes
resolves10.1038/nmeth.3317
HISAT: a fast spliced aligner with low memory requirements
resolves10.1083/jcb.136.1.19
Splicing Factors Associate with Hyperphosphorylated RNA Polymerase II in the Absence of Pre-mRNA
resolves10.1083/jcb.93.2.278
Analysis of DNA attached to the chromosome scaffold.
resolves10.1186/gb-2009-10-3-r25
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
resolves10.1006/excr.1996.0373
Repression of RNA Polymerase II and III Transcription during M Phase of the Cell Cycle
resolves10.1093/bioinformatics/btp352
The Sequence Alignment/Map format and SAMtools
resolves10.1016/j.molcel.2015.09.021
Mitotic Transcriptional Activation: Clearance of Actively Engaged Pol II via Transcriptional Elongation Control in Mitosis
resolves10.1073/pnas.1617636114
Transcriptional landscape of the human cell cycle
resolves10.1016/j.celrep.2017.04.067
Widespread Mitotic Bookmarking by Histone Marks and Transcription Factors in Pluripotent Stem Cells
resolves10.1038/nprot.2016.086
Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq)
resolves10.1038/s41467-020-20543-z
Transcription shapes genome-wide histone acetylation patterns
resolves10.1016/0092-8674(95)90231-7
Displacement of sequence-specific transcription factors from mitotic chromatin
resolves10.1038/nbt.1630
GREAT improves functional interpretation of cis-regulatory regions
resolves10.1038/42282
Marking of active genes on mitotic chromosomes
resolves10.1101/gad.308619.117
The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription
resolves10.1101/gad.2005511
Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells
resolves10.1101/gr.241547.118
CTCF sites display cell cycle–dependent dynamics in factor binding and nucleosome positioning
resolves10.7554/elife.47898
CTCF confers local nucleosome resiliency after DNA replication and during mitosis
resolves10.1126/science.aal4671
Mitotic transcription and waves of gene reactivation during mitotic exit
resolves10.1038/s41580-018-0077-z
A changing paradigm of transcriptional memory propagation through mitosis
resolves10.1101/sqb.2017.82.034280
Low-Level, Global Transcription during Mitosis and Dynamic Gene Reactivation during Mitotic Exit
resolves10.1128/mcb.17.10.5791
Mitotic Repression of RNA Polymerase II Transcription Is Accompanied by Release of Transcription Elongation Complexes
resolves10.1016/j.stemcr.2020.10.012
Dynamic 3D Chromatin Reorganization during Establishment and Maintenance of Pluripotency
resolves10.1016/j.molcel.2021.02.032
H3K27ac bookmarking promotes rapid post-mitotic activation of the pluripotent stem cell program without impacting 3D chromatin reorganization
resolves10.1016/j.molcel.2006.06.014
Controlling the Elongation Phase of Transcription with P-TEFb
resolves10.1016/0014-4827(62)90176-3
Synthesis of RNA and protein during mitosis in mammalian tissue culture cells
resolves10.1093/bioinformatics/btq033
BEDTools: a flexible suite of utilities for comparing genomic features
resolves10.1002/1873-3468.12828
Transcription factor retention on mitotic chromosomes: regulatory mechanisms and impact on cell fate decisions
resolves10.1093/nar/gkw257
deepTools2: a next generation web server for deep-sequencing data analysis
resolves10.1093/bioinformatics/btp616
<tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data
resolves10.1038/359156a0
Loss of gene function through rapid mitotic cycles in the Drosophila embryo
resolves10.1038/ncomms8126
Widespread disruption of host transcription termination in HSV-1 infection
resolves10.1038/nrm1981
Breaking barriers to transcription elongation
resolves10.1101/016642
Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions
resolves10.1101/gad.10.19.2389
Mitotic regulation of TFIID: inhibition of activator-dependent transcription and changes in subcellular localization.
resolves10.1126/science.1684878
Mitotic Phosphorylation of the Oct-1 Homeodomain and Regulation of Oct-1 DNA Binding Activity
resolves10.1093/bioinformatics/btv612
LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor
resolves10.1016/0092-8674(91)90182-x
Progression of the cell cycle through mitosis leads to abortion of nascent transcripts
resolves10.1111/j.1749-6632.1960.tb23259.x
NUCLEIC ACID SYNTHESIS IN RELATION TO THE CELL DIVISION CYCLE*
resolves10.7554/elife.35621
A stable mode of bookmarking by TBP recruits RNA polymerase II to mitotic chromosomes
resolves10.7554/elife.22280
A dynamic mode of mitotic bookmarking by transcription factors
resolves10.1038/s41588-020-0686-2
Transcription imparts architecture, function and logic to enhancer units
resolves10.1098/rsob.180011
Conserved temporal ordering of promoter activation implicates common mechanisms governing the immediate early response across cell types and stimuli
resolves10.1016/j.molcel.2015.06.016
Widespread Inducible Transcription Downstream of Human Genes
resolves10.1073/pnas.1711120114
Comparative analysis reveals genomic features of stress-induced transcriptional readthrough
resolves10.1242/jcs.103.2.381
Cytostellin: A novel, highly conserved protein that undergoes continuous redistribution during the cell cycle
resolves10.1128/mcb.15.4.1983
Mitotic Regulation of a TATA-Binding-Protein-Containing Complex
resolves10.1091/mbc.02-02-0030
Identification of Genes Periodically Expressed in the Human Cell Cycle and Their Expression in Tumors
resolves10.1038/s41576-019-0159-6
Nascent RNA analyses: tracking transcription and its regulation
resolves10.1089/omi.2011.0118
clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
resolves10.1093/bioinformatics/btp340
A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
resolves10.1101/sqb.1993.058.01.023
The Cycling of RNA Polymerase II during Transcription
resolves10.1038/s41586-019-1778-y
Chromatin structure dynamics during the mitosis-to-G1 phase transition
resolves10.1186/gb-2008-9-9-r137
Model-based Analysis of ChIP-Seq (MACS)
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