Every reference with a DOI in the deposited reference list resolved to a known
work in Crossref or DataCite at the dated check, and none carried a retraction,
withdrawal, or removal notice.
The 92 checked references that resolve
resolves10.1016/j.cell.2007.12.016Rumi Is a CAP10 Domain Glycosyltransferase that Modifies Notch and Is Required for Notch Signaling
resolves10.1016/j.ygeno.2021.04.003Genome assembly, sex-biased gene expression and dosage compensation in the damselfly Ischnura elegans
resolves10.1093/molbev/msw112Hundreds of Genes Experienced Convergent Shifts in Selective Pressure in Marine Mammals
resolves10.1126/science.1107239Widespread Parallel Evolution in Sticklebacks by Repeated Fixation of Ectodysplasin Alleles
resolves10.1126/science.aal3327De novo assembly of the
<i>Aedes aegypti</i>
genome using Hi-C yields chromosome-length scaffolds
resolves10.1038/ng.3198Convergent evolution of the genomes of marine mammals
resolves10.1093/nar/gkr688miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
resolves10.1109/TCBB.2013.68GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations
resolves10.1093/nar/gkg770Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
resolves10.1093/nar/gky1085eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
resolves10.1093/molbev/msy028The Birth and Death of Olfactory Receptor Gene Families in Mammalian Niche Adaptation
resolves10.1093/molbev/mst010MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
resolves10.1016/0300-483X(75)90097-9Uptake, elimination, and biotransformation of the lampricide 3-trifluoromethyl-4-nitrophenol (TFM) by larvae of the aquatic midge chironomus tentans
resolves10.1093/nar/gkw092Using intron position conservation for homology-based gene prediction
resolves10.1098/rspb.2019.1828Loss of olfaction in sea snakes provides new perspectives on the aquatic adaptation of amniotes
resolves10.1101/gr.215087.116Canu: scalable and accurate long-read assembly via adaptive
<i>k</i>
-mer weighting and repeat separation
resolves10.1038/ng1513Pyrexia is a new thermal transient receptor potential channel endowing tolerance to high temperatures in Drosophila melanogaster
resolves10.1007/s13355-019-00664-8First development and characterization of 27 novel microsatellite markers in the dobsonfly Neoneuromus ignobilis (Megaloptera: Corydalidae) at genome-scale level
resolves10.1093/nar/gki937Gene identification in novel eukaryotic genomes by self-training algorithm
resolves10.1073/pnas.1818532116A functional enrichment test for molecular convergent evolution finds a clear protein-coding signal in echolocating bats and whales
resolves10.1093/molbev/msaa077Unmatched Level of Molecular Convergence among Deeply Divergent Complex Multicellular Fungi
resolves10.1093/molbev/msaa015IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
resolves10.1139/gen-2016-0030Rates and patterns of molecular evolution in freshwater versus terrestrial insects
resolves10.1111/1755-0998.13252Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise
resolves10.1038/nbt.3122StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
resolves10.1186/s12862-018-1324-9Diversity and evolution of the transposable element repertoire in arthropods with particular reference to insects
resolves10.1093/bioinformatics/18.suppl_1.S71Rate4Site: an algorithmic tool for the identification of functional regions
in proteins by surface mapping of evolutionary determinants within their
homologues
resolves10.1093/molbev/msv022Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection
resolves10.1093/czoolo/60.5.561Habitat-dependent diversification and parallel molecular evolution: Water scavenger beetles as a case study
resolves10.1038/nrg.2016.11Causes of molecular convergence and parallelism in protein evolution
resolves10.1111/1755-0998.13377A chromosome level genome assembly of <i>Propsilocerus akamusi</i> to understand its response to heavy metal exposure
resolves10.1073/pnas.1109696108Rumi functions as both a protein
<i>O</i>
-glucosyltransferase and a protein
<i>O</i>
-xylosyltransferase
resolves10.1007/s001140050504Dragonflies Recognize the Water of Rendezvous and Oviposition Sites by Horizontally Polarized Light: A Behavioural Field Test
resolves10.1093/nar/gkaa220Galaxy HiCExplorer 3: a web server for reproducible Hi-C, capture Hi-C and single-cell Hi-C data analysis, quality control and visualization
resolves10.1111/syen.12287Evolutionary history of the complex polymorphic dobsonfly genus
<i>Neoneuromus</i>
(Megaloptera: Corydalidae)
resolves10.1038/ng.2835Minke whale genome and aquatic adaptation in cetaceans
resolves10.1093/nsr/nwaa002Comparative genomics reveal shared genomic changes in syngnathid fishes and signatures of genetic convergence with placental mammals
resolves10.1242/jcs.170944Cooperative functions of the two F-BAR proteins Cip4 and Nostrin in the regulation of E-cadherin in epithelial morphogenesis
resolves10.1093/molbev/msv091Are Convergent and Parallel Amino Acid Substitutions in Protein Evolution More Prevalent Than Neutral Expectations?
resolves10.1093/molbev/msx109Gene Tree Discordance Does Not Explain Away the Temporal Decline of Convergence in Mammalian Protein Sequence Evolution
The 23 references without a DOI — listed, not checked
no DOI — not checkedref8
no DOI — not checkedPymol: An open-source molecular graphics tool
no DOI — not checkedOrthoFinder: phylogenetic orthology inference for comparative genomics
no DOI — not checkedref19
no DOI — not checkedConvergent evolution of ramified antennae in insect lineages from the Early Cretaceous of Northeastern China
no DOI — not checkedNonadaptive amino acid convergence rates decrease over time
no DOI — not checkedIdentifying and removing haplotypic duplication in primary genome assemblies
no DOI — not checkedAutomated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
no DOI — not checkedEcological strategies of aquatic insects
no DOI — not checkedPredicting genes in single genomes with AUGUSTUS
no DOI — not checkedALICUT: a Perlscript which cuts ALISCORE identified RSS. Department of Bioinformatics
no DOI — not checkedRSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
no DOI — not checkedref59
no DOI — not checkedConvergent degeneration of olfactory receptor gene repertoires in marine mammals
no DOI — not checkedref63
no DOI — not checkedLarge-scale annotation and evolution analysis of MiRNA in insects
no DOI — not checkedref73
no DOI — not checkedBenchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
no DOI — not checkedUnusual environmental conditions preserve a Permian mesosaur-bearing Konservat-Lagerst�tte from Uruguay
no DOI — not checkedref87
no DOI — not checkedRefining convergent rate analysis with topology in mammalian longevity and marine transitions
no DOI — not checkedFMLRC: Hybrid long read error correction using an FM-index
no DOI — not checkedConvergent evolution of marine mammals is associated with distinct substitutions in common genes
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