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Limited Cross-Variant Immune Response From SARS-CoV-2 Omicron BA.2 in Naïve But Not Previously Infected Outpatients
25/25 checkable references clean · checked 2026-07-23
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
13 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 25 checked references that resolve
resolves10.1093/bioinformatics/btu638
HTSeq—a Python framework to work with high-throughput sequencing data
resolves10.1038/s41586-021-04117-7
Hybrid immunity improves B cells and antibodies against SARS-CoV-2 variants
resolves10.1016/j.chom.2022.04.017
SARS-CoV-2 Omicron sublineages show comparable cell entry but differential neutralization by therapeutic antibodies
resolves10.1038/s41586-021-04387-1
Omicron extensively but incompletely escapes Pfizer BNT162b2 neutralization
resolves10.1038/s41586-021-03739-1
Age-related immune response heterogeneity to SARS-CoV-2 vaccine BNT162b2
resolves10.1016/j.cell.2021.12.046
SARS-CoV-2 Omicron-B.1.1.529 leads to widespread escape from neutralizing antibody responses
resolves10.1038/s41467-021-23494-1
SARS-CoV-2 RNAemia and proteomic trajectories inform prognostication in COVID-19 patients admitted to intensive care
resolves10.1016/j.cell.2021.12.032
The Omicron variant is highly resistant against antibody-mediated neutralization: Implications for control of the COVID-19 pandemic
resolves10.1038/s43856-022-00083-x
BNT162b2 vaccination enhances interferon-JAK-STAT-regulated antiviral programs in COVID-19 patients infected with the SARS-CoV-2 Beta variant
resolves10.1126/science.abn7760
SARS-CoV-2 Omicron variant: Antibody evasion and cryo-EM structure of spike protein–ACE2 complex
resolves10.1038/s41590-021-01035-8
Altered ISGylation drives aberrant macrophage-dependent immune responses during SARS-CoV-2 infection
resolves10.1038/nbt.2931
Normalization of RNA-seq data using factor analysis of control genes or samples
resolves10.1038/s41591-021-01329-2
Single-cell multi-omics analysis of the immune response in COVID-19
resolves10.1038/s41591-021-01678-y
An infectious SARS-CoV-2 B.1.1.529 Omicron virus escapes neutralization by therapeutic monoclonal antibodies
resolves10.1038/s41586-022-04411-y
Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa
resolves10.1186/s12967-021-02936-w
TPM, FPKM, or Normalized Counts? A Comparative Study of Quantification Measures for the Analysis of RNA-seq Data from the NCI Patient-Derived Models Repository
The 13 references without a DOI — listed, not checked
no DOI — not checkedAntibody evasion of SARS-CoV-2 Omicron BA.1, BA.1.1, BA.2, and BA.3 sub-lineages
no DOI — not checkedref6
no DOI — not checkedISG15 secretion exacerbates inflammation in SARS-CoV-2 infection
no DOI — not checkedmRNA-1273 and BNT162b2 mRNA vaccines have reduced neutralizing activity against the SARS-CoV-2 omicron variant
no DOI — not checkedRapid isolation and immune profiling of SARS-CoV-2 specific memory B cell in convalescent COVID-19 patients via LIBRA-seq
no DOI — not checkedmRNA vaccination in octogenarians 15 and 20 months after recovery from COVID-19 elicits robust immune and antibody responses that include Omicron
no DOI — not checkedref22
no DOI — not checkedModerated estimation of fold change and dispersion for RNA-seq data with DESeq2
no DOI — not checkedNeutralization Profile after Recovery from SARS-CoV-2 Omicron Infection
no DOI — not checkedref30
no DOI — not checkedGermline IGHV3-53-encoded RBD-targeting neutralizing antibodies are commonly present in the antibody repertoires of COVID-19 patients
no DOI — not checkedNeutralization of the SARS-CoV-2 Omicron BA.1 and BA.2 Variants
no DOI — not checkedPotent and protective IGHV3-53/3-66 public antibodies and their shared escape mutant on the spike of SARS-CoV-2
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