Reference health
Pinpointing the Distinctive Impacts of Ten Cover Crop Species on the Resident and Active Fractions of the Soil Microbiome
48/48 checkable references clean · checked 2026-07-23
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
26 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 48 checked references that resolve
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Cover crop species have contrasting influence upon soil structural genesis and microbial community phenotype
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The Potential for Cereal Rye Cover Crops to Host Corn Seedling Pathogens
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Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots
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Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
resolves10.1038/ismej.2009.68
Exogenous glucosinolate produced by
<i>Arabidopsis thaliana</i>
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resolves10.1038/ismej.2017.119
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
resolves10.3389/fevo.2016.00089
Phylogenetic Relationships in the Festuca-Lolium Complex (Loliinae; Poaceae): New Insights from Chloroplast Sequences
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ALLYL ISOTHIOCYANATE RELEASE AND THE ALLELOPATHIC POTENTIAL OF BRASSICA NAPUS (BRASSICACEAE)
resolves10.1016/0038-0717(85)90113-0
Interactions of bacteria, protozoa and plants leading to mineralization of soil nitrogen
resolves10.1139/cjm-2019-0330
Bacterial microbiome associated with the rhizosphere and root interior of crops in Saskatchewan, Canada
resolves10.1038/nrmicro.2017.87
Embracing the unknown: disentangling the complexities of the soil microbiome
resolves10.1016/S0167-8809(99)00032-8
Soil protozoa as bioindicators: pros and cons, methods, diversity, representative examples
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Identifying the Active Microbiome Associated with Roots and Rhizosphere Soil of Oilseed Rape
resolves10.1016/j.jbiotec.2017.06.1198
25 years of serving the community with ribosomal RNA gene reference databases and tools
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The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy
resolves10.1038/s41598-019-49854-y
Conventional and organic soil management as divergent drivers of resident and active fractions of major soil food web constituents
resolves10.1007/s00374-019-01350-1
Highly connected taxa located in the microbial network are prevalent in the rhizosphere soil of healthy plant
resolves10.1016/j.apsoil.2013.12.016
Long-term effects of eight soil health treatments to control plant-parasitic nematodes and Verticillium dahliae in agro-ecosystems
resolves10.5598/imafungus.2011.02.01.07
Parascedosporium and its relatives: phylogeny and ecological trends
resolves10.1038/nrmicro2504
Microbial seed banks: the ecological and evolutionary implications of dormancy
resolves10.1016/j.soilbio.2017.09.014
Bacterial traits and quality contribute to the diet choice and survival of bacterial-feeding nematodes
resolves10.1371/journal.pone.0061217
phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
resolves10.1016/j.pedobi.2021.150787
Nematode grazing increases the allocation of plant-derived carbon to soil bacteria and saprophytic fungi, and activates bacterial species of the rhizosphere
resolves10.1111/1574-6941.12420
Anthropogenic land use shapes the composition and phylogenetic structure of soil arbuscular mycorrhizal fungal communities
resolves10.1111/1462-2920.12228
Host signature effect on plant root‐associated microbiomes revealed through analyses of resident
<i>vs</i>
. active communities
resolves10.1016/j.pedobi.2018.06.002
Carbon budgets of top- and subsoil food webs in an arable system
resolves10.3767/003158516X691951
New species of <i>Cladosporium</i> associated with human and animal infections
resolves10.1016/j.simyco.2016.07.002
Phylogeny and taxonomic revision of <i>Microascaceae</i> with emphasis on synnematous fungi
resolves10.1016/j.agee.2017.12.023
Crop yield gap and stability in organic and conventional farming systems
resolves10.1093/biosci/biz086
A Worm's World: Ecological Flexibility Pays Off for Free-Living Nematodes in Sediments and Soils
resolves10.1038/ismej.2015.41
Stability and succession of the rhizosphere microbiota depends upon plant type and soil composition
resolves10.1016/j.soilbio.2014.04.018
Community structure of prokaryotes and their functional potential in subsoils is more affected by spatial heterogeneity than by temporal variations
resolves10.1007/s13593-016-0385-7
Cover crops to increase soil microbial diversity and mitigate decline in perennial agriculture. A review
resolves10.3389/fpls.2017.02019
Community Profiling of Fusarium in Combination with Other Plant-Associated Fungi in Different Crop Species Using SMRT Sequencing
resolves10.1094/PHYTO-02-19-0045-R
Field Evaluation of Reduced Rate Brassicaceae Seed Meal Amendment and Rootstock Genotype on the Microbiome and Control of Apple Replant Disease
resolves10.1038/s41598-017-17949-z
Harnessing the microbiomes of Brassica vegetables for health issues
resolves10.1038/s41564-018-0129-3
Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
The 26 references without a DOI — listed, not checked
no DOI — not checkedref7
no DOI — not checkedTillage intensity and plant rhizosphere selection shape bacterial-archaeal assemblage diversity and nitrogen cycling genes
no DOI — not checkedLiving cover crops have immediate impacts on soil microbial community structure and function
no DOI — not checkedAssembly and ecological function of the root microbiome across angiosperm plant species
no DOI — not checkedTrophic interactions between predatory protists and pathogen-suppressive bacteria impact plant health
no DOI — not checkedRobust demarcation of the family Caryophanaceae (Planococcaceae) and its different genera including three novel genera based on phylogenomics and highly specific molecular signatures
no DOI — not checkedref31
no DOI — not checkedUsing cover crops to mitigate and adapt to climate change. A review
no DOI — not checkedDo cover crops benefit soil microbiome? A metaanalysis of current research
no DOI — not checkedref38
no DOI — not checkedEffects of continuous cropping of sugar beet (Beta vulgaris L.) on its endophytic and soil bacterial community by high-throughput sequencing
no DOI — not checkedAnalysis of compositions of microbiomes with bias correction
no DOI — not checkedref46
no DOI — not checkedref50
no DOI — not checkedModulation of the Root Microbiome by Plant Molecules: The Basis for Targeted Disease Suppression and Plant Growth Promotion
no DOI — not checkedDifferential abundance analysis for microbial marker-gene surveys
no DOI — not checkedScikit-learn: Machine learning in Python
no DOI — not checkedref55
no DOI — not checkedMYB72-dependent coumarin exudation shapes root microbiome assembly to promote plant health
no DOI — not checkedref62
no DOI — not checkedref64
no DOI — not checkedref69
no DOI — not checkedref70
no DOI — not checkedref71
no DOI — not checkedMicrobiome in crops: diversity, distribution, and potential role in crop improvement
no DOI — not checkedVariation of rhizosphere microbial community in continuous mono-maize seed production
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