Reference health
Novel endophytic lineages of <i>Tolypocladium</i> provide new insights into the ecology and evolution of <i>Cordyceps</i> -like fungi
2 of 83 checkable references need attention · checked 2026-07-22
At the dated check, the references listed below either did not resolve in Crossref or DataCite, or carried a retraction notice. Each one is shown with the registry record that put it there.
17 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
References needing attention
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does not resolve to a known work10.3852/mycologia.97.3.710
The 81 checked references that resolve
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Culturing and direct DNA extraction find different fungi from the same ericoid mycorrhizal roots
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Light Converts Endosymbiotic Fungus to Pathogen, Influencing Seedling Survival and Niche-Space Filling of a Common Tropical Tree, Iriartea deltoidea
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DIVERSITY AND HOST RANGE OF FOLIAR FUNGAL ENDOPHYTES: ARE TROPICAL LEAVES BIODIVERSITY HOTSPOTS?
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Antibiosis, mycoparasitism, and colonization success for endophytic Trichoderma isolates with biological control potential in Theobroma cacao
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Chaunopycnis pustulata sp. nov., a new clavicipitalean anamorph producing metabolites that modulate potassium ion channels
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A global meta‐analysis of <i>Tuber</i> ITS rDNA sequences: species diversity, host associations and long‐distance dispersal
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Association of Entomopathogenic Fungi with Exotic Bark Beetles in New Zealand Pine Plantations
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New Elaphomyces species (Elaphomycetaceae, Eurotiales, Ascomycota) from Guyana
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Multigene phylogeny reveals new lineage for Stachybotrys chartarum, the indoor air fungus
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Linking ex planta fungi with their endophytic stages: Perisporiopsis, a common leaf litter and soil fungus, is a frequent endophyte of Hevea spp. and other plants
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Field colonies of leaf‐cutting ants select plant materials containing low abundances of endophytic fungi
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Distribution and abundance of fungi in the soils of Taylor Valley, Antarctica
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What triggers grass endophytes to switch from mutualism to pathogenism?
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Endophytes and mycoparasites associated with an indigenous forest tree, Theobroma gileri, in Ecuador and a preliminary assessment of their potential as biocontrol agents of cocoa diseases
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Fungal grass endophytes and arthropod communities: lessons from plant defence theory and multitrophic interactions
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Microfungi in the fungus gardens of the leaf-cutting ant Atta cephalotes: a preliminary study
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Diversity of fungal endophytes in leaves and stems of wild rubber trees (Hevea brasiliensis) in Peru
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Culture-based study of endophytes associated with rubber trees in Peru reveals a new class of Pezizomycotina: Xylonomycetes
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Species delimitation in fungal endophyte diversity studies and its implications in ecological and biogeographic inferences
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The interplay between the effectiveness of the grass‐endophyte mutualism and the genetic variability of the host plant
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Hydrolytic enzymes secreted by Paecilomyces lilacinus cultured on sclerotia of Aspergillus flavus
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Dutch elm disease pathogen transmission by the banded elm bark beetle <i><scp>S</scp>colytus schevyrewi</i>
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Isolation and characterisation of<i>Isaria farinosa</i>and<i>Purpureocillium lilacinum</i>associated with emerald ash borer,<i>Agrilus planipennis</i>in Canada
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SATé-II: Very Fast and Accurate Simultaneous Estimation of Multiple Sequence Alignments and Phylogenetic Trees
resolves10.3852/12-207
A culture-based survey of fungi in soil from bat hibernacula in the eastern United States and its implications for detection of
<i>Geomyces destructans</i>
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resolves10.1111/j.1574-6968.2011.02322.x
Purpureocillium, a new genus for the medically important Paecilomyces lilacinus
resolves10.1139/x03-202
Planting <i>Betula pendula</i> on pine sites infested by <i>Heterobasidion annosum</i>: disease transfer, silvicultural evaluation, and community of wood-inhabiting fungi
resolves10.1007/BF01574767
Intraspecific diversity in the fungal speciesChaunopycnis alba: Implications for microbial screening programs
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Interkingdom Host Jumping Underground: Phylogenetic Analysis of Entomoparasitic Fungi of the Genus Cordyceps
resolves10.1016/j.jip.2008.01.010
Beauveria bassiana: Endophytic colonization and plant disease control
resolves10.1016/j.funeco.2010.02.001
Do all trees carry the seeds of their own destruction? PCR reveals numerous wood decay fungi latently present in sapwood of a wide range of angiosperm trees
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Filamentous fungi from the Atlantic marine sponge Dragmacidon reticulatum
resolves10.1007/s13225-010-0024-6
Can leaf degrading enzymes provide evidence that endophytic fungi becoming saprobes?
resolves10.5598/imafungus.2014.05.01.12
Phylogenetic-based nomenclatural proposals for Ophiocordycipitaceae (Hypocreales) with new combinations in Tolypocladium
resolves10.1016/j.ympev.2004.04.012
Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory
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Foliar endophytic fungi from Hevea brasiliensis and their antagonism on Microcyclus ulei
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Ecology of microfungal communities in gardens of fungus-growing ants (Hymenoptera: Formicidae): a year-long survey of three species of attine ants in Central Texas
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<i>Colletotrichum gloeosporioides</i>s.l. associated with<i>Theobroma cacao</i>and other plants in Panamá: multilocus phylogenies distinguish host-associated pathogens from asymptomatic endophytes
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Diversity of endophytic fungal community of cacao (<i>Theobroma</i><i> cacao</i> L.) and biological control of <i>Crinipellis</i><i> perniciosa, </i>causal agent of Witches' Broom Disease
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An outlook on the fungal internal transcribed spacer sequences in GenBank and the introduction of a web‐based tool for the exploration of fungal diversity
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Mining metadata from unidentified ITS sequences in GenBank: A case study in Inocybe (Basidiomycota)
resolves10.1016/j.mycres.2006.01.009
Trichoderma theobromicola and T. paucisporum: two new species isolated from cacao in South America
resolves10.3732/ajb.1100136
The insect‐pathogenic fungus <i>Metarhizium robertsii</i> (Clavicipitaceae) is also an endophyte that stimulates plant root development
resolves10.1017/S0954102012000879
Application of an automated ribosomal intergenic spacer analysis database for identification of cultured Antarctic fungi
resolves10.1016/j.fbr.2007.06.002
Botryosphaeriaceae as endophytes and latent pathogens of woody plants: diversity, ecology and impact
resolves10.1111/j.1365-294X.2007.03225.x
Phylogenetic evidence for an animal pathogen origin of ergot and the grass endophytes
resolves10.1093/bioinformatics/btl446
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
resolves10.1017/S095375620400139X
Towards a phylogenetic classification of Cordyceps: ITS nrDNA sequence data confirm divergent lineages and paraphyly
resolves10.1128/AEM.01165-07
Root Infection and Systemic Colonization of Maize by<i>Colletotrichum graminicola</i>
resolves10.3114/sim.2007.57.01
Phylogenetic classification of Cordyceps and the clavicipitaceous fungi
resolves10.1016/j.ympev.2008.08.028
The oldest fossil evidence of animal parasitism by fungi supports a Cretaceous diversification of fungal–arthropod symbioses
resolves10.1016/j.ympev.2007.03.011
A multi-gene phylogeny of Clavicipitaceae (Ascomycota, Fungi): Identification of localized incongruence using a combinational bootstrap approach
resolves10.1080/10635150701472164
Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments
resolves10.1038/nature05134
Continental-scale patterns of canopy tree composition and function across Amazonia
resolves10.1016/j.mycres.2008.01.008
Molecular characterisation of fungal endophytic morphospecies associated with the indigenous forest tree, Theobroma gileri, in Ecuador
resolves10.1098/rspb.2009.0196
Two fungal symbioses collide: endophytic fungi are not welcome in leaf-cutting ant gardens
resolves10.1371/journal.pone.0019039
Tasting Soil Fungal Diversity with Earth Tongues: Phylogenetic Test of SATé Alignments for Environmental ITS Data
resolves10.1016/j.foreco.2003.09.011
Inferred longevity of Amazonian rainforest trees based on a long-term demographic study
resolves10.1007/s00284-012-0235-z
Geographic and Tissue Influences on Endophytic Fungal Communities of Taxus chinensis var. mairei in China
resolves10.1007/s10658-012-0131-1
Colonization in cotton plants by a green fluorescent protein labelled strain of Verticillium dahliae
The 17 references without a DOI — listed, not checked
no DOI — not checkedCaballero-GeorgeCBolañosJOchoaECarballoJLCruzJAArnoldAE. 2010. Protocol to isolate sponge-associated fungi from tropical waters and an examination of their cardioprotective potential. Curr Trends Biotechnol Pharm 4:881–889.
no DOI — not checkedCarlsenTA. 2002. Molecular diversity of root endophytes in an alpine Bistorta vivipara-Kobresia myosuroides tundra plant community [master’s thesis]. Norway: Univ. Oslo Press. 53 p.
no DOI — not checkedChaverriPSamuelsGJ. 2013. Evolution of habitat preference and nutrition mode in a cosmopolitan fungal genus with evidence of interkingdom host jumps and major shifts in ecology. Evolution 67:2823–2837.
no DOI — not checkedDevarajanPTSuryanarayananTS. 2006. Evidence for the role of phytophagous insects in dispersal of non-grass fungal endophytes. Fungal Divers 23:111–119.
no DOI — not checkedGamsW. 1980. Chaunopycnis alba, gen. et sp. nov., a soil fungus intermediate between Moniliales and Sphaeropsidales. Persoonia 11:75–79.
no DOI — not checkedGazisR. 2012. Evaluating the endophytic fungal community in planted and wild rubber trees (Hevea brasiliensis) [doctoral dissertation]. College Park: Univ. Maryland Press. 264 p.
no DOI — not checkedGiordanoLGonthierPVareseGCMiserereLNicolottiG. 2009. Mycobiota inhabiting sapwood of healthy and declining Scots pine (Pinus sylvestris L.) trees in the Alps. Fungal Divers 38:69–83.
no DOI — not checkedHydeKDSoytongK. 2008. The fungal endophyte dilemma. Fungal Divers 33:163–173.
no DOI — not checkedMaddisonWPMaddisonDR. 2011. Mesquite 2.75: a modular system for evolutionary analysis. Available from http://mesquiteproject.org
no DOI — not checkedNirenbergHI. 1976. Untersuchungen über die morphologische und biologische Differenzierung in der Fusarium-Section Liseola. Berlin-Dahlem: Mitt Biol Bundesanst für Land- und Forstwirt, 169. p 1–117.
no DOI — not checkedOsesRValenzuelaSFreerJSanfuentesERodriguezJ. 2008. Fungal endophytes in xylem of healthy Chilean trees and their possible role in early wood decay. Fungal Divers 33:77–86.
no DOI — not checkedPagelMMeadeA. 2007. BayesTraits 1.0 computer package. Available from http://www.evolution.reading.ac.uk/BayesTraits.html
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no DOI — not checkedReynoldsHT. 2011. Systematics, phylogeography and ecology of Elaphomycetaceae [doctoral dissertation]. Durham, North Carolina: Duke Univ. Press. 182 p.
no DOI — not checkedRodriguesAPagnoccaFCBuenoOCPfenningLHBacciMJr 2005. Assessment of microfungi in fungus gardens free of the leaf-cutting ant Atta sexdens rubropilosa (Hymenoptera: Formicidae). Sociobiology 46:329–334.
no DOI — not checkedSeifertKMorgan-JonesGGamsWKendrickB. 2011. The genera of Hyphomycetes. Utrecht, the Netherlands: CBS-KNAW Fungal Biodiversity Centre. 997 p.
no DOI — not checkedStoneJKPolishookJDWhiteJRJ. 2004. Endophytic fungi. In: Biodiversity of fungi: inventory and monitoring methods. Elsevier. p 241–270.
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