Reference health
Metabarcoding of marine nematodes – evaluation of reference datasets used in tree-based taxonomy assignment approach
37/37 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
6 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 37 checked references that resolve
resolves10.1186/1471-2105-10-s14-s10
DNA barcode analysis: a comparison of phylogenetic and statistical classification methods
resolves10.1093/sysbio/syr010
Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood
resolves10.1007/s10750-009-0088-z
Barcoding marine nematodes: an improved set of nematode 18S rRNA primers to overcome eukaryotic co-interference
resolves10.3354/meps320001
Development and evaluation of a DNA-barcoding approach for the rapid identification of nematodes
resolves10.1111/aec.12271
Metabarcoding as a tool for investigating arthropod diversity in<i>N</i><i>epenthes</i>pitcher plants
resolves10.1371/journal.pone.0117562
Metabarcoding Is Powerful yet Still Blind: A Comparative Analysis of Morphological and Molecular Surveys of Seagrass Communities
resolves10.1098/rstb.2005.1726
An integrated approach to fast and informative morphological vouchering of nematodes for applications in molecular barcoding
resolves10.1371/journal.pone.0013716
Exploring the Use of Cytochrome Oxidase c Subunit 1 (COI) for DNA Barcoding of Free-Living Marine Nematodes
resolves10.1093/nar/gkh340
MUSCLE: multiple sequence alignment with high accuracy and high throughput
resolves10.1038/ncomms1095
Second-generation environmental sequencing unmasks marine metazoan biodiversity
resolves10.1093/molbev/msi066
Comparison of the Accuracies of Several Phylogenetic Methods Using Protein and DNA Sequences
resolves10.1371/journal.pone.0043865
Reverse Taxonomy for Elucidating Diversity of Insect-Associated Nematodes: A Case Study with Termites
resolves10.1093/molbev/mst010
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
resolves10.1371/journal.pone.0049334
CREST – Classification Resources for Environmental Sequence Tags
resolves10.1111/zoj.12324
Phylogenetic relationships within the superfamily Desmodoroidea (Nematoda: Desmodorida), with descriptions of two new and one known species
resolves10.7717/peerj.1047
Metabarcoding dietary analysis of coral dwelling predatory fish demonstrates the minor contribution of coral mutualists to their highly partitioned, generalist diet
resolves10.1093/nar/gkw290
Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
resolves10.1186/1471-2105-11-579
webPRANK: a phylogeny-aware multiple sequence aligner with interactive alignment browser
resolves10.1186/1471-2105-11-538
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
resolves10.1371/journal.pone.0051785
Profiling Nematode Communities in Unmanaged Flowerbed and Agricultural Field Soils in Japan by DNA Barcode Sequencing
resolves10.1080/10635150802422316
Statistical Assignment of DNA Sequences Using Bayesian Phylogenetics
resolves10.1093/nar/gks1219
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
resolves10.1186/s12898-014-0034-4
High-throughput sequencing of nematode communities from total soil DNA extractions
resolves10.1186/s12983-015-0115-z
iDNA from terrestrial haematophagous leeches as a wildlife surveying and monitoring tool – prospects, pitfalls and avenues to be developed
resolves10.1038/msb.2011.75
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
resolves10.3389/fmars.2016.00092
Worldwide Analysis of Sedimentary DNA Reveals Major Gaps in Taxonomic Knowledge of Deep-Sea Benthos
resolves10.1093/bioinformatics/btu033
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
resolves10.1186/1471-2164-11-461
MLTreeMap - accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies
resolves10.1163/156854109x456862
A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences
resolves10.1128/aem.00062-07
Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
The 6 references without a DOI — listed, not checked
no DOI — not checkedSensitivity of ribosomal RNA character sampling in the phylogeny of Rhabditida
no DOI — not checkedMesquite: a modular system for evolutionary analysis.
no DOI — not checkedCreating the CIPRES Science Gateway for inference of large phylogenetic trees
no DOI — not checkedCompilation of small ribosomal subunit RNA sequences.
no DOI — not checkedFigTree
no DOI — not checkedThalassomermis megamphis n. gen., n. sp. (Mermithidae: Nemata) from the Bathyal South Atlantic Ocean.
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work were clean at the dated check: each resolved to a known work in a public registry, and none
carried a retraction notice at that time. It says nothing about the quality, findings,
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checked 2026-07-22 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record
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