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Analysis of five complete genome sequences for members of the class Peribacteria in the recently recognized Peregrinibacteria bacterial phylum

29/29 checkable references clean · checked 2026-07-22

Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.

The 29 checked references that resolve

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Unusual biology across a group comprising more than 15% of domain Bacteria

resolves10.1186/gb-2009-10-8-r85

Community-wide analysis of microbial genome sequence signatures

resolves10.1093/nar/gkh340

MUSCLE: multiple sequence alignment with high accuracy and high throughput

resolves10.1093/bioinformatics/btq461

Search and clustering orders of magnitude faster than BLAST

resolves10.1111/1462-2920.12817

Metagenomic analysis of a high carbon dioxide subsurface microbial community populated by chemolithoautotrophs and bacteria and archaea from candidate phyla

resolves10.1128/AEM.71.4.1883-1889.2005

Folate Cross-Feeding Supports Symbiotic Homoacetogenic Spirochetes

resolves10.1038/ismej.2015.2

Aquifer environment selects for microbial species cohorts in sediment and groundwater

resolves10.1186/1471-2105-11-119

Prodigal: prokaryotic gene recognition and translation initiation site identification

resolves10.1093/bioinformatics/btu031

InterProScan 5: genome-scale protein function classification

resolves10.1093/nar/28.1.27

KEGG: Kyoto Encyclopedia of Genes and Genomes

resolves10.1128/mBio.00708-13

Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla

resolves10.1093/bioinformatics/bts199

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

resolves10.1038/nmeth.1923

Fast gapped-read alignment with Bowtie 2

resolves10.1093/molbev/msq177

Origins and Early Evolution of the Mevalonate Pathway of Isoprenoid Biosynthesis in the Three Domains of Life

resolves10.1038/ncomms7372

Diverse uncultivated ultra-small bacterial cells in groundwater

resolves10.1046/j.1365-2958.2001.02411.x

Sortase‐catalysed anchoring of surface proteins to the cell wall of Staphylococcus aureus

resolves10.1371/journal.pone.0077319

Relative Amino Acid Composition Signatures of Organisms and Environments

resolves10.1111/febs.12041

Lipoproteins in bacteria: structures and biosynthetic pathways

resolves10.1093/nar/gku1063

Rfam 12.0: updates to the RNA families database

resolves10.1093/bioinformatics/bts174

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

resolves10.1093/nar/gkm864

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

resolves10.1186/gb-2007-8-1-r10

Prediction of effective genome size in metagenomic samples

resolves10.1093/bioinformatics/btu033

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

resolves10.1093/bioinformatics/btm098

UniRef: comprehensive and non-redundant UniProt reference clusters

resolves10.1137/040608635

Graph Clustering Via a Discrete Uncoupling Process

resolves10.1080/01490451.2010.520074

Acetate Availability and its Influence on Sustainable Bioremediation of Uranium-Contaminated Groundwater

resolves10.1126/science.1224041

Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla

resolves10.1093/bioinformatics/btq249

PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

resolves10.1002/0471250953.bi1105s31

Using the Velvet de novo Assembler for Short‐Read Sequencing Technologies

What this badge says. CiteStamped means the CHECKABLE references of this work were clean at the dated check: each resolved to a known work in a public registry, and none carried a retraction notice at that time. It says nothing about the quality, findings, or importance of the work itself, and nothing about references deposited without a DOI.

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