Reference health
SECAPR—a bioinformatics pipeline for the rapid and user-friendly processing of targeted enriched Illumina sequences, from raw reads to alignments
24/24 checkable references clean · checked 2026-07-22
Every reference with a DOI in the deposited reference list resolved to a known work in Crossref or DataCite at the dated check, and none carried a retraction, withdrawal, or removal notice.
3 without a DOI — not checked. A reference deposited without a DOI is never matched by title or guessed at; it stays outside the checked set, and this line discloses that.
The 24 checked references that resolve
resolves10.1093/sysbio/syy039
Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements
resolves10.1186/1471-2164-13-403
Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales
resolves10.1016/j.ympev.2013.07.003
Next-generation sequencing and phylogenetic signal of complete mitochondrial genomes for resolving the evolutionary history of leaf-nosed bats (Phyllostomidae)
resolves10.7287/peerj.preprints.26449v3
Embracing heterogeneity: Building the Tree of Life and the future of phylogenomics
resolves10.1093/bioinformatics/btv646
PHYLUCE is a software package for the analysis of conserved genomic loci
resolves10.1111/1755-0998.12328
Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among <scp>H</scp>ymenoptera
resolves10.1093/sysbio/sys004
Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
resolves10.1038/nbt.1523
Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
resolves10.1038/nbt.1883
Full-length transcriptome assembly from RNA-Seq data without a reference genome
resolves10.1038/nprot.2013.084
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
resolves10.1093/bioinformatics/btq215
Optimal algorithms for haplotype assembly from whole-genome sequence data
resolves10.1111/bij.12551
Phylogenomic analyses of species relationships in the genus<i>Sabal</i>(Arecaceae) using targeted sequence capture
resolves10.7717/peerj.3569
Targeted NGS for species level phylogenomics: “made to measure” or “one size fits all”?
resolves10.1093/bioinformatics/btp698
Fast and accurate long-read alignment with Burrows–Wheeler transform
resolves10.1101/gr.107524.110
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
resolves10.1093/sysbio/syt061
Target Capture and Massively Parallel Sequencing of Ultraconserved Elements for Comparative Studies at Shallow Evolutionary Time Scales
The 3 references without a DOI — listed, not checked
no DOI — not checkedFastQC a quality control tool for high throughput sequence data
no DOI — not checkedGenera palmarum
no DOI — not checkedImproved pairwise alignment of genomic DNA
What this badge says. CiteStamped means the CHECKABLE references of this
work were clean at the dated check: each resolved to a known work in a public registry, and none
carried a retraction notice at that time. It says nothing about the quality, findings,
or importance of the work itself, and nothing about references deposited without a DOI.
checked 2026-07-22 — re-checked daily as this page is visited; titles and statuses come from Crossref and DataCite and are not part of the signed record
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