On the public citation graph

Can we build it? Yes we can, but should we use it? Assessing the quality and value of a very large phylogeny of campanulid angiosperms

https://doi.org/10.1002/ajb2.1020
0 signed · 120 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/tax.563001openalex-snapshot
Towards a phylogenetic nomenclature of Tracheophyta
inferredcites →https://doi.org/10.1006/bojl.2000.0380openalex-snapshot
Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences
inferredcites →https://doi.org/10.1007/bf00161167openalex-snapshot
Relative rates of nucleotide substitution at the rbcl locus of monocotyledonous plants
inferredcites →https://doi.org/10.1016/j.cryobiol.2013.04.008openalex-snapshot
Analysis of supercooling activity of tannin-related polyphenols
inferredcites →https://doi.org/10.1016/j.envexpbot.2013.11.011openalex-snapshot
Adaptive mechanisms of freeze avoidance in plants: A brief update
inferredcites →https://doi.org/10.1016/j.palaeo.2010.06.010openalex-snapshot
Climatic change during the Palaeocene to Eocene based on fossil plants from Fushun, China
inferredcites →https://doi.org/10.1016/j.revpalbo.2011.11.008openalex-snapshot
New fossil endocarps of Sambucus (Adoxaceae) from the upper Pliocene in SW China
inferredcites →https://doi.org/10.1016/s1055-7903(02)00240-3openalex-snapshot
Phylogenetics of asterids based on 3 coding and 3 non-coding chloroplast DNA markers and the utility of non-coding DNA at higher taxonomic levels
inferredcites →https://doi.org/10.1016/s1055-7903(03)00208-2openalex-snapshot
Ribosomal ITS sequences and plant phylogenetic inference
inferredcites →https://doi.org/10.1038/nature14393openalex-snapshot
Doubtful pathways to cold tolerance in plants
inferredcites →https://doi.org/10.1038/ncomms2836openalex-snapshot
Taller plants have lower rates of molecular evolution
inferredcites →https://doi.org/10.1038/s41559-017-0126openalex-snapshot
Contentious relationships in phylogenomic studies can be driven by a handful of genes
inferredcites →https://doi.org/10.1046/j.1095-8312.2003.00233.xopenalex-snapshot
Simultaneous analysis of basal Hymenoptera (Insecta): introducing robust-choice sensitivity analysis
inferredcites →https://doi.org/10.1073/pnas.0811087106openalex-snapshot
Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates
inferredcites →https://doi.org/10.1073/pnas.1423041112openalex-snapshot
Synthesis of phylogeny and taxonomy into a comprehensive tree of life
inferredcites →https://doi.org/10.1073/pnas.1423653112openalex-snapshot
Early evolution of the angiosperm clade Asteraceae in the Cretaceous of Antarctica
inferredcites →https://doi.org/10.1073/pnas.1517649113openalex-snapshot
Phylogenetic uncertainty and fossil calibration of Asteraceae chronograms
inferredcites →https://doi.org/10.1073/pnas.93.19.10274openalex-snapshot
Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL.
inferredcites →https://doi.org/10.1073/pnas.94.11.5722openalex-snapshot
Molecular evolution of angiosperm mitochondrial introns and exons
inferredcites →https://doi.org/10.1080/10635150290069913openalex-snapshot
An Approximately Unbiased Test of Phylogenetic Tree Selection
inferredcites →https://doi.org/10.1080/10635150290102339openalex-snapshot
Increased Taxon Sampling Greatly Reduces Phylogenetic Error
inferredcites →https://doi.org/10.1080/10635150290102357openalex-snapshot
Increased Taxon Sampling Is Advantageous for Phylogenetic Inference
inferredcites →https://doi.org/10.1086/431800openalex-snapshot
Phylogenetic Analyses of Basal Angiosperms Based on Nine Plastid, Mitochondrial, and Nuclear Genes
inferredcites →https://doi.org/10.1086/519460openalex-snapshot
Correlates of Diversification in the Plant Clade Dipsacales: Geographic Movement and Evolutionary Innovations
inferredcites →https://doi.org/10.1093/bioinformatics/btg412openalex-snapshot
APE: Analyses of Phylogenetics and Evolution in R language
inferredcites →https://doi.org/10.1093/bioinformatics/btl446openalex-snapshot
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btm619openalex-snapshot
Phyutility: a phyloinformatics tool for trees, alignments and molecular data
inferredcites →https://doi.org/10.1093/bioinformatics/bts492openalex-snapshot
treePL: divergence time estimation using penalized likelihood for large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btu181openalex-snapshot
geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees
inferredcites →https://doi.org/10.1093/molbev/msr266openalex-snapshot
Inconsistencies in Estimating the Age of HIV-1 Subtypes Due to Heterotachy
inferredcites →https://doi.org/10.1093/molbev/mst024openalex-snapshot
Ultrafast Approximation for Phylogenetic Bootstrap
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/nar/gkh340openalex-snapshot
MUSCLE: multiple sequence alignment with high accuracy and high throughput
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003811openalex-snapshot
Performance of a Divergence Time Estimation Method under a Probabilistic Model of Rate Evolution
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003974openalex-snapshot
Estimating Absolute Rates of Molecular Evolution and Divergence Times: A Penalized Likelihood Approach
inferredcites →https://doi.org/10.1093/sysbio/46.3.523openalex-snapshot
Gene Trees in Species Trees
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1093/sysbio/syt032openalex-snapshot
Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)
inferredcites →https://doi.org/10.1093/sysbio/syt034openalex-snapshot
Identifying Hidden Rate Changes in the Evolution of a Binary Morphological Character: The Evolution of Plant Habit in Campanulid Angiosperms
inferredcites →https://doi.org/10.1093/sysbio/syu131openalex-snapshot
Model Inadequacy and Mistaken Inferences of Trait-Dependent Speciation
inferredcites →https://doi.org/10.1093/sysbio/syv024openalex-snapshot
Impacts of Terraces on Phylogenetic Inference
inferredcites →https://doi.org/10.1093/sysbio/syv027openalex-snapshot
Heterogeneous Rates of Molecular Evolution and Diversification Could Explain the Triassic Age Estimate for Angiosperms
inferredcites →https://doi.org/10.1093/sysbio/syw022openalex-snapshot
Detecting Hidden Diversification Shifts in Models of Trait-Dependent Speciation and Extinction
inferredcites →https://doi.org/10.1098/rstb.1994.0068openalex-snapshot
The reconstructed evolutionary process
inferredcites →https://doi.org/10.1111/2041-210x.12051openalex-snapshot
Congruification: support for time scaling large phylogenetic trees
inferredcites →https://doi.org/10.1111/boj.12385openalex-snapshot
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
inferredcites →https://doi.org/10.1111/evo.12180openalex-snapshot
FRUIT EVOLUTION AND DIVERSIFICATION IN CAMPANULID ANGIOSPERMS
inferredcites →https://doi.org/10.1111/evo.12614openalex-snapshot
Extinction can be estimated from moderately sized molecular phylogenies
inferredcites →https://doi.org/10.1111/evo.12817openalex-snapshot
No substitute for real data: A cautionary note on the use of phylogenies from birth-death polytomy resolvers for downstream comparative analyses
inferredcites →https://doi.org/10.1111/j.1365-313x.2006.02842.xopenalex-snapshot
Ethylene‐induced stomatal closure in Arabidopsis occurs via AtrbohF‐mediated hydrogen peroxide synthesis
inferredcites →https://doi.org/10.1111/j.1558-5646.2011.01401.xopenalex-snapshot
A NOVEL COMPARATIVE METHOD FOR IDENTIFYING SHIFTS IN THE RATE OF CHARACTER EVOLUTION ON TREES
inferredcites →https://doi.org/10.1111/j.1931-0846.2007.tb00409.xopenalex-snapshot
The Fall Line: a Physiographic‐Forest Vegetation Boundary
inferredcites →https://doi.org/10.1111/nph.13305openalex-snapshot
Temperate radiations and dying embers of a tropical past: the diversification of Viburnum
inferredcites →https://doi.org/10.1126/science.1163197openalex-snapshot
Rates of Molecular Evolution Are Linked to Life History in Flowering Plants
inferredcites →https://doi.org/10.1126/science.1206357openalex-snapshot
Terraces in Phylogenetic Tree Space
inferredcites →https://doi.org/10.1186/1471-2148-10-155openalex-snapshot
Phylogenomics with incomplete taxon coverage: the limits to inference
inferredcites →https://doi.org/10.1186/1471-2148-13-80openalex-snapshot
A Southern Hemisphere origin for campanulid angiosperms, with traces of the break-up of Gondwana
inferredcites →https://doi.org/10.1186/1471-2148-6-36openalex-snapshot
A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects.
inferredcites →https://doi.org/10.1186/1471-2148-9-14openalex-snapshot
Erratum to: Chromosomal evolution of the PKD1gene family in primates
inferredcites →https://doi.org/10.1186/1471-2148-9-37openalex-snapshot
Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches
inferredcites →https://doi.org/10.12705/656.7openalex-snapshot
Insights into the phylogeny and evolutionary history of Calyceraceae
inferredcites →https://doi.org/10.1371/journal.pone.0089543openalex-snapshot
Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees
inferredcites →https://doi.org/10.1600/036364410791638306openalex-snapshot
Phylogeny and Phylogenetic Nomenclature of the Campanulidae based on an Expanded Sample of Genes and Taxa
inferredcites →https://doi.org/10.1890/11-0638.1openalex-snapshot
Synthesizing phylogenetic knowledge for ecological research
inferredcites →https://doi.org/10.2307/25065864openalex-snapshot
Towards a phylogenetic nomenclature of Tracheophyta
inferredcites →https://doi.org/10.2307/25065865openalex-snapshot
In defence of a conifer taxonomy which recognises evolution
inferredcites →https://doi.org/10.2307/2666224openalex-snapshot
Phylogenetic Analysis of Asterids Based on Sequences of Four Genes
inferredcites →https://doi.org/10.3417/2014033openalex-snapshot
Assessing the Fossil Record of Asterids in the Context of Our Current Phylogenetic Framework1
inferredcites →https://doi.org/10.3724/sp.j.1002.2008.08016openalex-snapshot
Taxon sampling and the accuracy of phylogenetic analyses
inferredcites →https://doi.org/10.3732/ajb.1000404openalex-snapshot
Angiosperm phylogeny: 17 genes, 640 taxa

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/phytotaxa.484.1.4zenodo-depositor-declared
Rayenia malalcurensis (Escalloniaceae), a new genus and species endemic to Central Chile
inferred← citeshttps://doi.org/10.1002/ajb2.1059openalex-snapshot
Challenges of comprehensive taxon sampling in comparative biology: Wrestling with rosids
inferred← citeshttps://doi.org/10.1002/ajb2.1071openalex-snapshot
Using and navigating the plant tree of life
inferred← citeshttps://doi.org/10.1002/ajb2.1255openalex-snapshot
Model clades are vital for comparative biology, and ascertainment bias is not a problem in practice: a response to Beaulieu and O'Meara (2018)
inferred← citeshttps://doi.org/10.1002/ajb2.1278openalex-snapshot
Diversity and skepticism are vital for comparative biology: a response to Donoghue and Edwards (2019)
inferred← citeshttps://doi.org/10.1002/ajb2.1479openalex-snapshot
Estimating rates and patterns of diversification with incomplete sampling: a case study in the rosids
inferred← citeshttps://doi.org/10.1002/ajb2.16127openalex-snapshot
A trait‐based approach to determining principles of plant biogeography
inferred← citeshttps://doi.org/10.1016/b978-0-12-812628-8.50008-0openalex-snapshot
Diversity and Classification of Flowering Plants: Eudicots
inferred← citeshttps://doi.org/10.1016/j.isci.2023.106362openalex-snapshot
Opposing effects of plant traits on diversification
inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107287openalex-snapshot
Combining molecular and geographical data to infer the phylogeny of Lamiales and its dispersal patterns in and out of the tropics
inferred← citeshttps://doi.org/10.1016/j.ympev.2022.107620openalex-snapshot
Comprehensive taxon sampling and vetted fossils help clarify the time tree of shorebirds (Aves, Charadriiformes)
inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107963openalex-snapshot
A supermatrix phylogeny of the world’s bees (Hymenoptera: Anthophila)
inferred← citeshttps://doi.org/10.1038/s41467-020-17116-5openalex-snapshot
Recent accelerated diversification in rosids occurred outside the tropics
inferred← citeshttps://doi.org/10.1038/s41467-023-42745-xopenalex-snapshot
The radiation continuum and the evolution of frog diversity
inferred← citeshttps://doi.org/10.1086/715114openalex-snapshot
Sexual Dichromatism Is Decoupled from Diversification over Deep Time in Fishes
inferred← citeshttps://doi.org/10.1093/evolut/qpaf006openalex-snapshot
Drought tolerance as an evolutionary precursor to frost and winter tolerance in grasses
inferred← citeshttps://doi.org/10.1093/evolut/qpaf207openalex-snapshot
Distinct evolutionary signatures underlie body shape diversity across deep sea habitats
inferred← citeshttps://doi.org/10.1093/evolut/qpaf220openalex-snapshot
Widespread evolution of poricidal flowers: a striking example of morphological convergence across flowering plants
inferred← citeshttps://doi.org/10.1093/gbe/evab200openalex-snapshot
Taxonomic Uncertainty and the Anomaly Zone: Phylogenomics Disentangle a Rapid Radiation to Resolve Contentious Species ( Gila robusta Complex) in the Colorado River
inferred← citeshttps://doi.org/10.1093/icb/icac085openalex-snapshot
Patterns of Phenotypic Evolution Associated with Marine/Freshwater Transitions in Fishes
inferred← citeshttps://doi.org/10.1093/sysbio/syab002openalex-snapshot
A Total-Group Phylogenetic Metatree for Cetacea and the Importance of Fossil Data in Diversification Analyses
inferred← citeshttps://doi.org/10.1093/sysbio/syac066openalex-snapshot
Reducing the Biases in False Correlations Between Discrete Characters
inferred← citeshttps://doi.org/10.1093/sysbio/syad032openalex-snapshot
The Major Features of Macroevolution
inferred← citeshttps://doi.org/10.1098/rstb.2023.0299openalex-snapshot
Reading Yule in light of the history and present of macroevolution
inferred← citeshttps://doi.org/10.1101/2022.10.19.512857openalex-snapshot
Long-term responses of life-history strategies to climatic variability in flowering plants
inferred← citeshttps://doi.org/10.1101/692509openalex-snapshot
Taxonomic Uncertainty and the Anomaly Zone: Phylogenomics Disentangle a Rapid Radiation to Resolve Contentious Species ( Gila robusta complex) in the Colorado River
inferred← citeshttps://doi.org/10.1101/694950openalex-snapshot
Exploring the phylogeny of rosids with a five-locus supermatrix from GenBank
inferred← citeshttps://doi.org/10.1111/2041-210x.13096openalex-snapshot
Py PHLAWD : A python tool for phylogenetic dataset construction
inferred← citeshttps://doi.org/10.1111/2041-210x.13182openalex-snapshot
An r package and online resource for macroevolutionary studies using the ray‐finned fish tree of life
inferred← citeshttps://doi.org/10.1111/2041-210x.14442openalex-snapshot
Simpson's tachytely or bradytely? The importance of quantifying rate uncertainty
inferred← citeshttps://doi.org/10.1111/ele.13768openalex-snapshot
Evidence for general size‐by‐habitat rules in actinopterygian fishes across nine scales of observation
inferred← citeshttps://doi.org/10.1111/ele.13962openalex-snapshot
The causes and ecological context of rapid morphological evolution in birds
inferred← citeshttps://doi.org/10.1111/evo.13832openalex-snapshot
Diatoms diversify and turn over faster in freshwater than marine environments*
inferred← citeshttps://doi.org/10.1111/evo.14517openalex-snapshot
A flexible method for estimating tip diversification rates across a range of speciation and extinction scenarios
inferred← citeshttps://doi.org/10.1111/jse.12686openalex-snapshot
What are “tippy” and “stemmy” phylogenies? Resolving a phylogenetic terminological tangle
inferred← citeshttps://doi.org/10.1111/nph.16155openalex-snapshot
Geophytism in monocots leads to higher rates of diversification
inferred← citeshttps://doi.org/10.1111/nph.18971openalex-snapshot
The evolutionary responses of life‐history strategies to climatic variability in flowering plants
inferred← citeshttps://doi.org/10.1111/nph.19421openalex-snapshot
Global analysis of Poales diversification – parallel evolution in space and time into open and closed habitats
inferred← citeshttps://doi.org/10.1111/nph.71148openalex-snapshot
Evolutionary and environmental drivers of dry‐season deciduousness in a legume genus
inferred← citeshttps://doi.org/10.1111/syen.12324openalex-snapshot
A comprehensive molecular phylogeny of tiger beetles (Coleoptera, Carabidae, Cicindelinae)
inferred← citeshttps://doi.org/10.1146/annurev-ecolsys-102320-093722openalex-snapshot
Simulation Tests of Methods in Evolution, Ecology, and Systematics: Pitfalls, Progress, and Principles
inferred← citeshttps://doi.org/10.1186/s12863-023-01186-7openalex-snapshot
Draft genome assemblies for two species of Escallonia (Escalloniales)
inferred← citeshttps://doi.org/10.1371/currents.tol.085c713acafc8711b2ff7010a4b03733openalex-snapshot
Next-generation phenomics for the Tree of Life
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1012458openalex-snapshot
Noise leads to the perceived increase in evolutionary rates over short time scales
inferred← citeshttps://doi.org/10.1600/036364422x16512564801560openalex-snapshot
Synthesizing Existing Phylogenetic Data to Advance Phylogenetic Research in Orobanchaceae
inferred← citeshttps://doi.org/10.21203/rs.3.rs-10953607/v1openalex-snapshot
Long terminal repeat retrotransposons in Angiosperm evolution.
inferred← citeshttps://doi.org/10.32942/osf.io/azytcopenalex-snapshot
Discovering the rules of plant biogeography using a trait-based approach
inferred← citeshttps://doi.org/10.7287/peerj.6328v0.1/reviews/1openalex-snapshot
Peer Review #1 of "A new species of Escallonia (Escalloniaceae) from the inter-Andean tropical dry forests of Bolivia (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.6328v0.1/reviews/2openalex-snapshot
Peer Review #2 of "A new species of Escallonia (Escalloniaceae) from the inter-Andean tropical dry forests of Bolivia (v0.1)"
inferred← citeshttps://doi.org/10.7717/peerj.6328openalex-snapshot
A new species of Escallonia (Escalloniaceae) from the inter-Andean tropical dry forests of Bolivia
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.