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Settling a family feud: a high‐level phylogenomic framework for the Gentianales based on 353 nuclear genes and partial plastomes
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Asclepiadospermum gen. nov., the earliest fossil record of Asclepiadoideae (Apocynaceae) from the early Eocene of central Qinghai‐Tibetan Plateau, and its biogeographic implications
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Molecular‐based assessments of tribal and generic limits and relationships in Rubiaceae (Gentianales): Polyphyly of Pomazoteae and paraphyly of Ophiorrhizeae and Ophiorrhiza
inferredcites →https://doi.org/10.1002/tax.582013openalex-snapshot
Evolutionary patterns in neotropical Helieae (Gentianaceae): evidence from morphology, chloroplast and nuclear DNA sequences
inferredcites →https://doi.org/10.1002/tax.594003openalex-snapshot
The phylogenetic position of milkweeds (Apocynaceae subfamilies Secamonoideae and Asclepiadoideae): Evidence from the nucleus and chloroplast
inferredcites →https://doi.org/10.1002/tax.604001openalex-snapshot
Molecular support for a basal grade of morphologically distinct, monotypic genera in the species‐rich Vanguerieae alliance (Rubiaceae, Ixoroideae): Its systematic and conservation implications
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CLADISTICS AND FAMILY LEVEL CLASSIFICATION OF THE GENTIANALES
inferredcites →https://doi.org/10.1007/978-1-4615-5419-6_10openalex-snapshot
Phylogenetic Incongruence: Window into Genome History and Molecular Evolution
inferredcites →https://doi.org/10.1007/978-3-642-54010-3_2openalex-snapshot
Classification and Evolution of the Family Gentianaceae
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Molecular systematics of southern African monkey orange Strychnos L. (Loganiaceae)
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Global coffee market: Socio-economic and cultural dynamics
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A phylogenomic analysis of Nepenthes (Nepenthaceae)
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Systematics, character evolution, and biogeography of Gentianaceae, including a new tribal and subtribal classification
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The delayed and geographically heterogeneous diversification of flowering plant families
inferredcites →https://doi.org/10.1038/s41586-019-1693-2openalex-snapshot
One thousand plant transcriptomes and the phylogenomics of green plants
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Circumscription of the Genus Cynanchum (Apocynaceae—Asclepiadoideae)
inferredcites →https://doi.org/10.1046/j.1463-6409.1999.00023.xopenalex-snapshot
Phylogeny of the Hymenoptera: A cladistic reanalysis of Rasnitsyn’s (1988) data
inferredcites →https://doi.org/10.1071/sb12002openalex-snapshot
Phylogenetic relationships in Loganieae (Loganiaceae) inferred from nuclear ribosomal and chloroplast DNA sequence data
inferredcites →https://doi.org/10.1080/106351599260085openalex-snapshot
More Characters or More Taxa for a Robust Phylogeny—Case Study from the Coffee Family (Rubiaceae)
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Origins of Novel Alkaloid Types: A Mechanism for Rapid Phenotypic Evolution of Plant Secondary Compounds
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Time Tree of Rubiaceae: Phylogeny and Dating the Family, Subfamilies, and Tribes
inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
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The Newick utilities: high-throughput phylogenetic tree processing in the U nix shell
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Trimmomatic: a flexible trimmer for Illumina sequence data
inferredcites →https://doi.org/10.1093/bioinformatics/btv234openalex-snapshot
ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes
inferredcites →https://doi.org/10.1093/bioinformatics/bty633openalex-snapshot
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
inferredcites →https://doi.org/10.1093/gbe/evt140openalex-snapshot
Horizontal Transfer of DNA from the Mitochondrial to the Plastid Genome and Its Subsequent Evolution in Milkweeds (Apocynaceae)
inferredcites →https://doi.org/10.1093/molbev/msaa015openalex-snapshot
IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era
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Asterid Phylogenomics/Phylotranscriptomics Uncover Morphological Evolutionary Histories and Support Phylogenetic Placement for Numerous Whole-Genome Duplications
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UFBoot2: Improving the Ultrafast Bootstrap Approximation
inferredcites →https://doi.org/10.1093/molbev/msz240openalex-snapshot
Treeio: An R Package for Phylogenetic Tree Input and Output with Richly Annotated and Associated Data
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Discovery of Paralogous Nuclear Gene Sequences Coding for the Second-Largest Subunit of RNA Polymerase II (RPB2) and Their Phylogenetic Utility in Gentianales of the Asterids
inferredcites →https://doi.org/10.1093/sysbio/syaa008openalex-snapshot
The Multispecies Coalescent Model Outperforms Concatenation Across Diverse Phylogenomic Data Sets
inferredcites →https://doi.org/10.1093/sysbio/syab035openalex-snapshot
A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life
inferredcites →https://doi.org/10.1093/sysbio/syw037openalex-snapshot
Terrace Aware Data Structure for Phylogenomic Inference from Supermatrices
inferredcites →https://doi.org/10.1093/sysbio/syy086openalex-snapshot
A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering
inferredcites →https://doi.org/10.1111/2041-210x.12628openalex-snapshot
ggtree : an r package for visualization and annotation of phylogenetic trees with their covariates and other associated data
inferredcites →https://doi.org/10.1111/boj.12038openalex-snapshot
Phylogenetic relationships and new tribal delimitations in subfamily Ixoroideae (Rubiaceae)
inferredcites →https://doi.org/10.1111/boj.12156openalex-snapshot
On the systematic position of some Asian enigmatic genera of Asclepiadoideae (Apocynaceae)
inferredcites →https://doi.org/10.1111/boj.12385openalex-snapshot
An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG IV
inferredcites →https://doi.org/10.1111/j.0014-3820.2003.tb01495.xopenalex-snapshot
THE DIVERSIFICATION OF HALENIA (GENTIANACEAE): ECOLOGICAL OPPORTUNITY VERSUS KEY INNOVATION
inferredcites →https://doi.org/10.1111/j.1756-1051.1995.tb02124.xopenalex-snapshot
The identity of Siderobombyx and a new species of Xanthophytum (Rubiaceae)
inferredcites →https://doi.org/10.1111/j.1759-6831.2010.00097.xopenalex-snapshot
Angiosperm phylogeny inferred from sequences of four mitochondrial genes
inferredcites →https://doi.org/10.1111/jse.12192openalex-snapshot
A supermatrix approach provides a comprehensive genus‐level phylogeny for Gentianales
inferredcites →https://doi.org/10.1111/jse.12566openalex-snapshot
Conflicting phylogenetic signals in genomic data of the coffee family (Rubiaceae)
inferredcites →https://doi.org/10.1130/0016-7606(2003)115<0549:agoteg>2.0.co;2openalex-snapshot
40Ar/39Ar geochronology of the Eocene Green River Formation, Wyoming
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2105-6-31openalex-snapshot
Automated generation of heuristics for biological sequence comparison
inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
inferredcites →https://doi.org/10.1186/s12864-018-4620-2openalex-snapshot
TreeShrink: fast and accurate detection of outlier long branches in collections of phylogenetic trees
inferredcites →https://doi.org/10.12705/634.4openalex-snapshot
Phylogenetic structure and clade circumscriptions in the Gardenieae complex (Rubiaceae)
inferredcites →https://doi.org/10.12705/641.19openalex-snapshot
Molecular phylogenetics and generic assessment in the tribe Pavetteae (Rubiaceae)
inferredcites →https://doi.org/10.1371/journal.pone.0126690openalex-snapshot
A Revised Time Tree of the Asterids: Establishing a Temporal Framework For Evolutionary Studies of the Coffee Family (Rubiaceae)
inferredcites →https://doi.org/10.1600/0363644053661832openalex-snapshot
Phylogenetics of the New World Subtribes of Asclepiadeae (Apocynaceae—Asclepiadoideae): Metastelmatinae, Oxypetalinae, and Gonolobinae
inferredcites →https://doi.org/10.1600/036364409788606424openalex-snapshot
Utility of Secondary Structure in Phylogenetic Reconstructions Using nrDNA ITS Sequences - an Example from Potalieae (Gentianaceae: Asteridae)
inferredcites →https://doi.org/10.1600/036364414x680708openalex-snapshot
Phylogenetics and Biogeography of the Genus Metastelma (Apocynaceae-Asclepiadoideae-Asclepiadeae: Metastelmatinae)
inferredcites →https://doi.org/10.2174/0929867043455846openalex-snapshot
The Catharanthus Alkaloids:Pharmacognosy and Biotechnology
inferredcites →https://doi.org/10.2307/1222975openalex-snapshot
Silica gel: An ideal material for field preservation of leaf samples for DNA studies
inferredcites →https://doi.org/10.2307/2399846openalex-snapshot
Phylogenetics of Seed Plants: An Analysis of Nucleotide Sequences from the Plastid Gene rbcL
inferredcites →https://doi.org/10.2307/2399888openalex-snapshot
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inferredcites →https://doi.org/10.2307/25065412openalex-snapshot
Phylogeny of the tribe Cinchoneae (Rubiaceae), its position in Cinchonoideae, and description of a new genus, Ciliosemina
inferredcites →https://doi.org/10.2307/2657003openalex-snapshot
Phylogenetic relationships within the Gentianales based on NDHF and RBCL sequences, with particular reference to the Loganiaceae
inferredcites →https://doi.org/10.2307/2992015openalex-snapshot
An Ordinal Classification for the Families of Flowering Plants
inferredcites →https://doi.org/10.2307/3298638openalex-snapshot
Subtribe Astephaninae (Apocynaceae-Asclepiadoideae) Reconsidered: New Evidence Based on cpDNA Spacers
inferredcites →https://doi.org/10.2307/3647436openalex-snapshot
Asclepiadeae classification: evaluating the phylogenetic relationships of New World Asclepiadoideae (Apocynaceae)
inferredcites →https://doi.org/10.2307/3667090openalex-snapshot
Remarks on the Classification of the Rubiaceae
inferredcites →https://doi.org/10.2307/3668012openalex-snapshot
Further Notes on the Tribe Pavetteae (Rubiaceae)
inferredcites →https://doi.org/10.2307/4135449openalex-snapshot
History and concepts of big plant genera
inferredcites →https://doi.org/10.2307/4135489openalex-snapshot
Subtribal division of Ceropegieae (ApocynaceaeAsclepiadoideae)
inferredcites →https://doi.org/10.3133/pp154jopenalex-snapshot
Additions to the flora of the Green River formation
inferredcites →https://doi.org/10.3133/pp185copenalex-snapshot
The recognizable species of the Green River flora
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R: A Language and Environment for Statistical Computing
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Factors Affecting Targeted Sequencing of 353 Nuclear Genes From Herbarium Specimens Spanning the Diversity of Angiosperms
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inferredcites →https://doi.org/10.3417/0026-6493(2007)94[268:pasotr]2.0.co;2openalex-snapshot
PHYLOGENY AND SYSTEMATICS OF THE RAUVOLFIOIDEAE (APOCYNACEAE) BASED ON MOLECULAR AND MORPHOLOGICAL EVIDENCE1
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PHYLOGENY OF APOCYNOIDEAE AND THE APSA CLADE (APOCYNACEAE S.L.)1
inferredcites →https://doi.org/10.3417/0026-6493(2007)94[407:doaait]2.0.co;2openalex-snapshot
DIVERSIFICATION OF ASCLEPIADOIDEAE (APOCYNACEAE) IN THE NEW WORLD1
inferredcites →https://doi.org/10.3417/2006205openalex-snapshot
A Global Assessment of Distribution, Diversity, Endemism, and Taxonomic Effort in the Rubiaceae 1
inferredcites →https://doi.org/10.3732/ajb.1000404openalex-snapshot
Angiosperm phylogeny: 17 genes, 640 taxa
inferredcites →https://doi.org/10.3732/ajb.1100202openalex-snapshot
Climate niches of milkweeds with plesiomorphic traits (Secamonoideae; Apocynaceae) and the milkweed sister group link ancient African climates and floral evolution
inferredcites →https://doi.org/10.3732/ajb.1200330openalex-snapshot
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Conflicting results from mitochondrial genomic data challenge current views of Rubiaceae phylogeny
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HybPiper: Extracting coding sequence and introns for phylogenetics from high‐throughput sequencing reads using target enrichment
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Kajewskiella, a New Rubiaceous Genus from the Solomon Islands
inferredcites →https://doi.org/10.7282/t3v69jx2openalex-snapshot
Evolution and systematics of the angiosperm order Gentianales with an in-depth focus on Loganiaceae and its species-rich and toxic genus Strychnos
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Cladoceras rovumense sp. nov. (Gentianales-Rubiaceae), a new species from southeast Tanzania and northeast Mozambique
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inferred← citeshttps://doi.org/10.1101/2023.04.01.535177openalex-snapshot
In defense of Apocynaceae: inference on evolution of pyrrolizidine alkaloids from evolution of an enzyme in their biosynthetic pathway, homospermidine synthase
inferred← citeshttps://doi.org/10.1101/2025.06.20.660724openalex-snapshot
Going green: Recycling transcriptomes to infer evolutionary relationships, gene duplication, gene tree conflict, and patterns of molecular evolution in the Apocynaceae
inferred← citeshttps://doi.org/10.1101/2025.07.09.663802openalex-snapshot
The power to resolve relationships: identifying incongruence and precision of reduced representation and genome-wide data in phylogenomics and population genomics
inferred← citeshttps://doi.org/10.1111/1755-0998.70202openalex-snapshot
Simultaneous Inference of Flora‐Wide Nuclear and Plastid Phylogenies Using Angiosperms353 Sequence Capture Data
inferred← citeshttps://doi.org/10.1111/jipb.13415openalex-snapshot
Phylogenomics and the flowering plant tree of life
inferred← citeshttps://doi.org/10.1111/jipb.13609openalex-snapshot
Nuclear phylogenomics of angiosperms and insights into their relationships and evolution
inferred← citeshttps://doi.org/10.1111/jse.12747openalex-snapshot
Ecological and geological processes impacting speciation modes drive the formation of wide‐range disjunctions within tribe Putorieae (Rubiaceae)
inferred← citeshttps://doi.org/10.1111/jse.70014openalex-snapshot
An updated plastome phylogeny and molecular dating of Apocynaceae, with an emphasis on histories of biogeography and diversification in tropical and subtropical Asia
inferred← citeshttps://doi.org/10.1111/njb.03732openalex-snapshot
New chromosome counts on Rubiaceae from Africa and the Western Indian Ocean islands
inferred← citeshttps://doi.org/10.1111/tpj.16142openalex-snapshot
Deep reticulation: the long legacy of hybridization in vascular plant evolution
inferred← citeshttps://doi.org/10.11648/j.plant.20251303.13openalex-snapshot
J. L. Reveal’s Revelance Re-revealed: Addenda to Newly Required Infrafamilial Ranks in Selected Families
inferred← citeshttps://doi.org/10.11648/j.plant.20261403.11openalex-snapshot
Lauding the Linnaean Legacy: New Infrafamilial and Hybrid Names in Selected Families and Genera
inferred← citeshttps://doi.org/10.1186/s12864-025-12108-5openalex-snapshot
Holistic approach for plant species circumscription integrating standard barcodes, chloroplast genomes, single-copy nuclear genes and micro-morphological data: a case study in Epimedium (Berberidaceae)
inferred← citeshttps://doi.org/10.1186/s12870-022-03480-5openalex-snapshot
Phylogenomic and comparative analyses of Coffeeae alliance (Rubiaceae): deep insights into phylogenetic relationships and plastome evolution
inferred← citeshttps://doi.org/10.1371/journal.pone.0302365openalex-snapshot
Plastid phylogenomics and cytonuclear discordance in Rubioideae, Rubiaceae
inferred← citeshttps://doi.org/10.1600/036364423x16847773873134openalex-snapshot
Classification of the Celastrales Based on Integration of Genomic, Morphological, and Sanger-Sequence Characters
inferred← citeshttps://doi.org/10.1600/036364424x17267811220452openalex-snapshot
A Piece of the Piper Puzzle: Systematics of Piper section Enckea, a Neotropical Section in a Giant Genus
inferred← citeshttps://doi.org/10.1600/036364424x17323182682762openalex-snapshot
Phylogenomics Of Boraginaceae and Boraginales Using Lineage-Specific and Angiosperms353 Loci
inferred← citeshttps://doi.org/10.3100/hpib.v29iss1.2024.n8openalex-snapshot
A Conspectus of Angiosperm Supertribes
inferred← citeshttps://doi.org/10.3389/fevo.2021.719741openalex-snapshot
Evolution of Dispersal, Habit, and Pollination in Africa Pushed Apocynaceae Diversification After the Eocene-Oligocene Climate Transition
inferred← citeshttps://doi.org/10.3389/fpls.2022.823190openalex-snapshot
Highly Resolved Papilionoid Legume Phylogeny Based on Plastid Phylogenomics
inferred← citeshttps://doi.org/10.3389/fpls.2022.967456openalex-snapshot
Target capture data resolve recalcitrant relationships in the coffee family (Rubioideae, Rubiaceae)
inferred← citeshttps://doi.org/10.3390/biology14121719openalex-snapshot
Global Distribution Patterns and Climatic Drivers of Plant Diversity in Rubiaceae
inferred← citeshttps://doi.org/10.3390/d17020136openalex-snapshot
Nuclear Phylogenomics of Angiosperms and Evolutionary Implications
inferred← citeshttps://doi.org/10.46471/gigabyte.71openalex-snapshot
A highly contiguous, scaffold-level nuclear genome assembly for the fever tree (Cinchona pubescens Vahl) as a novel resource for Rubiaceae research
inferred← citeshttps://doi.org/10.48130/gcomm-0026-0009openalex-snapshot
A comprehensive analysis of 14 chloroplast genomes from the subfamily Apocynoideae (Apocynaceae)
inferred← citeshttps://doi.org/10.5091/plecevo.84606openalex-snapshot
Floral ontogeny links Dialypetalanthus (Condamineeae) with the floral developmental morphology of other Rubiaceae
inferred← citeshttps://doi.org/10.5091/plecevo.85589openalex-snapshot
A taxonomic revision of the ecologically important Ochna holstii (Ochnaceae) complex using molecular and morphological data
inferred← citeshttps://doi.org/10.7287/peerj.15778v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Metagenomics of African Empogona and Tricalysia (Rubiaceae) reveals the presence of leaf endophytes (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.15778v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Metagenomics of African Empogona and Tricalysia (Rubiaceae) reveals the presence of leaf endophytes (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.15778v0.2/reviews/2openalex-snapshot
Peer Review #2 of "Metagenomics of African Empogona and Tricalysia (Rubiaceae) reveals the presence of leaf endophytes (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.15778openalex-snapshot
Metagenomics of African Empogona and Tricalysia (Rubiaceae) reveals the presence of leaf endophytes
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