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Chiral Cliffs: Investigating the Influence of Chirality on Binding Affinity

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Structure Modification in Chemical Databases
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Exploring enantioselective molecular recognition mechanisms with chemoinformatic techniques
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The Elements of Statistical Learning: Data Mining, Inference, and Prediction
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Extreme Gradient Boosting as a Method for Quantitative Structure–Activity Relationships
inferredcites →https://doi.org/10.1021/acs.jmedchem.5b00552openalex-snapshot
Effect of Chirality on Common in Vitro Experiments: An Enantiomeric Pair Analysis
inferredcites →https://doi.org/10.1021/ci000082aopenalex-snapshot
Novel Chirality Descriptors Derived from Molecular Topology
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Atom pairs as molecular features in structure-activity studies: definition and applications
inferredcites →https://doi.org/10.1021/ci025516bopenalex-snapshot
QSAR Modeling Using Chirality Descriptors Derived from Molecular Topology
inferredcites →https://doi.org/10.1021/ci060117sopenalex-snapshot
On Outliers and Activity CliffsWhy QSAR Often Disappoints
inferredcites →https://doi.org/10.1021/ci100050topenalex-snapshot
Extended-Connectivity Fingerprints
inferredcites →https://doi.org/10.1021/ci1001845openalex-snapshot
Chemical Substitutions That Introduce Activity Cliffs Across Different Compound Classes and Biological Targets
inferredcites →https://doi.org/10.1021/ci3001138openalex-snapshot
MMP-Cliffs: Systematic Identification of Activity Cliffs on the Basis of Matched Molecular Pairs
inferredcites →https://doi.org/10.1021/ci300158vopenalex-snapshot
Systematic Identification and Classification of Three-Dimensional Activity Cliffs
inferredcites →https://doi.org/10.1021/ci300274copenalex-snapshot
Extending the Activity Cliff Concept: Structural Categorization of Activity Cliffs and Systematic Identification of Different Types of Cliffs in the ChEMBL Database
inferredcites →https://doi.org/10.1021/ci600542bopenalex-snapshot
Novel Approach for the Numerical Characterization of Molecular Chirality
inferredcites →https://doi.org/10.1021/ci900450mopenalex-snapshot
Computationally Efficient Algorithm to Identify Matched Molecular Pairs (MMPs) in Large Data Sets
inferredcites →https://doi.org/10.1021/ci970460kopenalex-snapshot
Atomic Chirality, a Quantitative Measure of the Chirality of the Environment of an Atom
inferredcites →https://doi.org/10.1021/jm040163oopenalex-snapshot
A Shape-Based 3-D Scaffold Hopping Method and Its Application to a Bacterial Protein−Protein Interaction
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Discovery of 5-Arylsulfonamido-3- (pyrrolidin-2-ylmethyl)-1H-indole Derivatives as Potent, Selective 5-HT6Receptor Agonists and Antagonists
inferredcites →https://doi.org/10.1021/jm201706bopenalex-snapshot
Exploring Activity Cliffs in Medicinal Chemistry
inferredcites →https://doi.org/10.1021/jm300131xopenalex-snapshot
The Experimental Uncertainty of Heterogeneous Public Ki Data
inferredcites →https://doi.org/10.1021/jm401120gopenalex-snapshot
Recent Progress in Understanding Activity Cliffs and Their Utility in Medicinal Chemistry
inferredcites →https://doi.org/10.1023/a:1010933404324openalex-snapshot
Random Forests
inferredcites →https://doi.org/10.1093/nar/28.1.235openalex-snapshot
The Protein Data Bank
inferredcites →https://doi.org/10.1093/nar/gkw1074openalex-snapshot
The ChEMBL database in 2017
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A Coefficient of Agreement for Nominal Scales
inferredcites →https://doi.org/10.1351/pac199870051129openalex-snapshot
Glossary of terms used in medicinal chemistry (IUPAC Recommendations 1998)
inferredcites →https://doi.org/10.2174/156802611795165197openalex-snapshot
Numerical Descriptors for the Characterization of Chiral Compounds and their Applications in Modeling Biological and Toxicological Activities
inferredcites →https://doi.org/10.2174/157340908786786001openalex-snapshot
Chirality Descriptors in QSAR
inferredcites →https://doi.org/10.48550/arxiv.1201.0490openalex-snapshot
Scikit-learn: Machine Learning in Python
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rdkit/rdkit: 2016_03_5 (Q1 2016) Release

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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New mathematical measures for apprehending complexity of chiral molecules using information entropy
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Multiple Conformer Descriptors for QSAR Modeling
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ChiENN: Embracing Molecular Chirality with Graph Neural Networks
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Ligand-based and structure-based approaches for the identification of potential SARS-CoV-2 3CLpro inhibitors
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Advances in exploring activity cliffs
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Machine learning for small molecule drug discovery in academia and industry
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Synthesis and structure-activity relationship of nitrile-based cruzain inhibitors incorporating a trifluoroethylamine-based P2 amide replacement
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Automated chiral method screening – Evaluation of generated chromatographic data sets to further optimize screening efficiency
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Chiral cation promoted interfacial charge extraction for efficient tin-based perovskite solar cells
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A unifying geometric framework for computational representation of stereoisomers based on mixed product
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25 Years of Small-Molecule Optimization at Novartis: A Retrospective Analysis of Chemical Series Evolution
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Deep Learning vs Classical Methods in Potency and ADME Prediction: Insights from a Computational Blind Challenge
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New Workflow for QSAR Model Development from Small Data Sets: Small Dataset Curator and Small Dataset Modeler. Integration of Data Curation, Exhaustive Double Cross-Validation, and a Set of Optimal Model Selection Techniques
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.8b01238openalex-snapshot
Effect of α-Methoxy Substitution on the Anti-HIV Activity of Dihydropyrimidin-4(3H)-ones
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Discovery and Optimization of Potent and Subtype-Selective Urea-Derived Na V 1.8 Inhibitors
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Machine Learning for Fast, Quantum Mechanics-Based Approximation of Drug Lipophilicity
inferred← citeshttps://doi.org/10.1021/acsomega.9b02221openalex-snapshot
Evolving Concept of Activity Cliffs
inferred← citeshttps://doi.org/10.1038/s41467-025-63730-6openalex-snapshot
Unified and explainable molecular representation learning for imperfectly annotated data from the hypergraph view
inferred← citeshttps://doi.org/10.1038/s42004-025-01423-3openalex-snapshot
fragSMILES as a chemical string notation for advanced fragment and chirality representation
inferred← citeshttps://doi.org/10.1039/c9md00463gopenalex-snapshot
Introducing a new category of activity cliffs combining different compound similarity criteria
inferred← citeshttps://doi.org/10.1063/5.0253682openalex-snapshot
Fool's gold: Ligand–receptor interactions and the origins of life
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Fusing 2D and 3D molecular graphs as unambiguous molecular descriptors for conformational and chiral stereoisomers
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MGRFN: Integrating Multiple Molecular Graph Representations for Molecular Property Prediction
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Systematic identification of activity cliffs with dual‐atom replacements and their rationalization on the basis of single‐atom replacement analogs and X‐ray structures
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ChiralRetro: Chirality-Sensitive Encoding and Enhanced Pathway Strategies in Retrosynthesis
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Binding mode information improves fragment docking
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Carried but Conditionally Used: A Frozen Held-Out Audit of Whether Chirality-Aware Molecular Fingerprints Predict Measured Same-Assay Enantioselectivity
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Increasing the Public Activity Cliff Knowledge Base With New Categories of Activity Cliffs
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Evolving Drug Design Methodology: from QSAR to AIDD
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SMG-BERT: integrating stereoscopic information and chemical representation for molecular property prediction
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Two Decades of 4D-QSAR: A Dying Art or Staging a Comeback?
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Automatic Identification of Analogue Series from Large Compound Data Sets: Methods and Applications
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Evidence for the Presence of Core structure-dependent Activity Cliffs
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Beyond Chemical 1D knowledge using Transformers
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