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Population genomics reveals a candidate gene involved in bumble bee pigmentation

https://doi.org/10.1002/ece3.2935
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Population genomics of divergence among extreme and intermediate color forms in a polymorphic insect
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Landscape heterogeneity predicts gene flow in a widespread polymorphic bumble bee, Bombus bifarius (Hymenoptera: Apidae)
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Bee conservation in the age of genomics
inferredcites →https://doi.org/10.1016/j.anbehav.2004.06.022openalex-snapshot
The antioxidant function of many animal pigments: are there consistent health benefits of sexually selected colourants?
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Molybdenum and tungsten enzymes: the xanthine oxidase family
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Insect melanism: the molecules matter
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Adaptation and speciation: what can Fst tell us?
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Adaptation genomics: the next generation
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Xanthine Dehydrogenase and Pteridine Metabolism in Colias Butterflies
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Cloning of two Bombyx homologues of the Drosophila rosy gene and their relationship to larval translucent skin colour mutants
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Detecting loci under selection in a hierarchically structured population
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Developmental mechanisms of stripe patterns in rodents
inferredcites →https://doi.org/10.1038/nbt.1754openalex-snapshot
Integrative genomics viewer
inferredcites →https://doi.org/10.1038/s41559-016-0052openalex-snapshot
Complex modular architecture around a simple toolkit of wing pattern genes
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TCS: a computer program to estimate gene genealogies
inferredcites →https://doi.org/10.1051/apido:2006019openalex-snapshot
A century of advances in bumblebee domestication and the economic and environmental aspects of its commercialization for pollination
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Rearing Bumble Bee Colonies in Captivity
inferredcites →https://doi.org/10.1086/502802openalex-snapshot
A Fast and Flexible Statistical Model for Large-Scale Population Genotype Data: Applications to Inferring Missing Genotypes and Haplotypic Phase
inferredcites →https://doi.org/10.1086/523358openalex-snapshot
Evolutionary Transitions in Floral Color
inferredcites →https://doi.org/10.1086/682949openalex-snapshot
Reliable Detection of Loci Responsible for Local Adaptation: Inference of a Null Model through Trimming the Distribution of F ST
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adegenet : a R package for the multivariate analysis of genetic markers
inferredcites →https://doi.org/10.1093/bioinformatics/btp187openalex-snapshot
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot
Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
inferredcites →https://doi.org/10.1093/genetics/123.3.585openalex-snapshot
Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.
inferredcites →https://doi.org/10.1093/genetics/129.4.1099openalex-snapshot
The rosy locus in Drosophila melanogaster: xanthine dehydrogenase and eye pigments.
inferredcites →https://doi.org/10.1093/molbev/msv334openalex-snapshot
Detecting Genomic Signatures of Natural Selection with Principal Component Analysis: Application to the 1000 Genomes Data
inferredcites →https://doi.org/10.1098/rspb.2013.2502openalex-snapshot
Methylation and worker reproduction in the bumble-bee (Bombus terrestris)
inferredcites →https://doi.org/10.1101/gr.2289704openalex-snapshot
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
inferredcites →https://doi.org/10.1111/1755-0998.12077openalex-snapshot
De novo transcriptomic analyses for non‐model organisms: an evaluation of methods across a multi‐species data set
inferredcites →https://doi.org/10.1111/bij.12356openalex-snapshot
Defining the colour pattern phenotype in bumble bees (Bombus): a new model for evo devo
inferredcites →https://doi.org/10.1111/j.0014-3820.2003.tb00302.xopenalex-snapshot
GENETIC AND GEOGRAPHIC DIFFERENTIATION IN THE RIO NEGRO TUCO-TUCO (CTENOMYS RIONEGRENSIS): INFERRING THE ROLES OF MIGRATION AND DRIFT FROM MULTIPLE GENETIC MARKERS
inferredcites →https://doi.org/10.1111/j.0014-3820.2005.tb00926.xopenalex-snapshot
GENETIC DRIFT WITHIN A PROTECTED POLYMORPHISM: ENIGMATIC VARIATION IN COLOR-MORPH FREQUENCIES IN THE CANDY-STRIPE SPIDER, ENOPLOGNATHA OVATA
inferredcites →https://doi.org/10.1111/j.1095-8312.2007.00784.xopenalex-snapshot
A comprehensive phylogeny of the bumble bees (Bombus)
inferredcites →https://doi.org/10.1111/j.1095-8312.2007.00878.xopenalex-snapshot
The distribution of bumblebee colour patterns worldwide: possible significance for thermoregulation, crypsis, and warning mimicry
inferredcites →https://doi.org/10.1111/j.1096-3642.2012.00861.xopenalex-snapshot
Mimetic colour pattern evolution in the highly polymorphicBombus trifasciatus(Hymenoptera: Apidae) species complex and its comimics
inferredcites →https://doi.org/10.1111/j.1365-294x.2004.02125.xopenalex-snapshot
Identifying adaptive genetic divergence among populations from genome scans
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02683.xopenalex-snapshot
Molecular evidence for glacial refugia of mountain plants in the European Alps
inferredcites →https://doi.org/10.1111/j.1558-5646.1980.tb04002.xopenalex-snapshot
THE EVOLUTIONARY SIGNIFICANCE OF BUMBLE BEE COLOR PATTERNS: A MIMETIC INTERPRETATION
inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb05657.xopenalex-snapshot
ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE
inferredcites →https://doi.org/10.1111/j.1755-0998.2010.02847.xopenalex-snapshot
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows
inferredcites →https://doi.org/10.1111/j.1755-148x.2012.01014.xopenalex-snapshot
Unraveling the thread of nature’s tapestry: the genetics of diversity and convergence in animal pigmentation
inferredcites →https://doi.org/10.1111/mec.12636openalex-snapshot
Revisiting comparisons of genetic diversity in stable and declining species: assessing genome‐wide polymorphism in N orth A merican bumble bees using RAD sequencing
inferredcites →https://doi.org/10.1111/mec.13165openalex-snapshot
SNP genotyping and population genomics from expressed sequences – current advances and future possibilities
inferredcites →https://doi.org/10.1111/mec.13198openalex-snapshot
Molecular tools and bumble bees: revealing hidden details of ecology and evolution in a model system
inferredcites →https://doi.org/10.1186/1471-2148-10-269openalex-snapshot
Island biology and morphological divergence of the Skyros wall lizard Podarcis gaigeae: a combined role for local selection and genetic drift on color morph frequency divergence?
inferredcites →https://doi.org/10.1186/1471-2164-12-48openalex-snapshot
A second generation genetic map of the bumblebee Bombus terrestris (Linnaeus, 1758) reveals slow genome and chromosome evolution in the Apidae
inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
inferredcites →https://doi.org/10.1186/s13059-015-0623-3openalex-snapshot
The genomes of two key bumblebee species with primitive eusocial organization
inferredcites →https://doi.org/10.1371/journal.pgen.1000862openalex-snapshot
Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
inferredcites →https://doi.org/10.1371/journal.pgen.1005887openalex-snapshot
Genomics of Rapid Incipient Speciation in Sympatric Threespine Stickleback
inferredcites →https://doi.org/10.1371/journal.pone.0058815openalex-snapshot
Development of Strategies for SNP Detection in RNA-Seq Data: Application to Lymphoblastoid Cell Lines and Evaluation Using 1000 Genomes Data
inferredcites →https://doi.org/10.14411/eje.2014.021openalex-snapshot
Biochemistry and biosynthesis of insect pigments
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.4161/fly.19695openalex-snapshot
A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff
inferredcites →https://doi.org/10.5860/choice.52-0837openalex-snapshot
Bumble bees of North America: an identification guide

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/jhr.97.129470zenodo-depositor-declared
Integrative taxonomy of a new species of a bumble bee-mimicking brood parasitic bee, Tetralonioidella mimetica (Hymenoptera, Apoidea, Apidae), investigated through phylogenomics
inferred← citeshttps://doi.org/10.1007/s00114-023-01854-9openalex-snapshot
Pigmentary colouration of hairy carpenter bees, genus Xylocopa
inferred← citeshttps://doi.org/10.1007/s13592-019-00648-1openalex-snapshot
Colour patterns, distribution and food plants of the Asian bumblebee Bombus bicoloratus (Hymenoptera: Apidae)
inferred← citeshttps://doi.org/10.1016/j.cois.2019.09.003openalex-snapshot
Adaptation to the abiotic environment in insects: the influence of variability on ecophysiology and evolutionary genomics
inferred← citeshttps://doi.org/10.1038/s41598-021-87194-yopenalex-snapshot
A combined RAD-Seq and WGS approach reveals the genomic basis of yellow color variation in bumble bee Bombus terrestris
inferred← citeshttps://doi.org/10.1093/jhered/esaf017openalex-snapshot
Carotenoids, instead of pteridines, determine color of xanthophores and erythrophores in tilapia
inferred← citeshttps://doi.org/10.1098/rsbl.2021.0221openalex-snapshot
Pterin-based pigmentation in animals
inferred← citeshttps://doi.org/10.1111/eva.13464openalex-snapshot
Identifying genes associated with genetic control of color polymorphism in the pearl oysterPinctada margaritiferavar.cumingii(Linnaeus 1758) using a comparative whole genome pool‐sequencing approach
inferred← citeshttps://doi.org/10.1111/eva.13558openalex-snapshot
The impact of geography and climate on the population structure and local adaptation in a wild bee
inferred← citeshttps://doi.org/10.1111/ibi.13276openalex-snapshot
The mechanistic, genetic and evolutionary causes of bird eye colour variation
inferred← citeshttps://doi.org/10.1111/mec.14735openalex-snapshot
Distance, elevation and environment as drivers of diversity and divergence in bumble bees across latitude and altitude
inferred← citeshttps://doi.org/10.1111/syen.12419openalex-snapshot
Substantial genetic divergence and lack of recent gene flow support cryptic speciation in a colour polymorphic bumble bee ( Bombus bifarius ) species complex
inferred← citeshttps://doi.org/10.1242/jeb.247040openalex-snapshot
A rapid return to normal: temporal gene expression patterns following cold exposure in the bumble bee Bombus impatiens
inferred← citeshttps://doi.org/10.1534/g3.120.401437openalex-snapshot
De Novo Genome Assemblies for Three North American Bumble Bee Species: Bombus bifarius, Bombus vancouverensis, and Bombus vosnesenskii
inferred← citeshttps://doi.org/10.32942/osf.io/5h4pkopenalex-snapshot
Bird Eye Color: A Rainbow of Variation, a Spectrum of Explanations
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