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Unraveling the Complete Mitochondrial Genome of Potamalpheops Sp. (Purple Zebra Shrimp) (Crustacea: Decapoda) Provides Insights Into Its Phylogenetic Relationships and Gene Order Rearrangements
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/978-94-011-4309-7_13openalex-snapshot
The Duplication/Random Loss Model for Gene Rearrangement Exemplified by Mitochondrial Genomes of Deuterostome Animals
inferredcites →https://doi.org/10.1007/bf01215182openalex-snapshot
Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes
inferredcites →https://doi.org/10.1007/s00299-001-0399-7openalex-snapshot
Regeneration and molecular characterization of intergeneric somatic hybrids between Citrus reticulata and Poncirus trifoliata
inferredcites →https://doi.org/10.1007/s11033-010-0122-2openalex-snapshot
Complete mitochondrial genome of the Chinese spiny lobster Panulirus stimpsoni (Crustacea: Decapoda): genome characterization and phylogenetic considerations
inferredcites →https://doi.org/10.1007/s11427-012-4348-1openalex-snapshot
Complete mitochondrial genome of the Japanese snapping shrimp Alpheus japonicus (Crustacea: Decapoda: Caridea): Gene rearrangement and phylogeny within Caridea
inferredcites →https://doi.org/10.1016/j.cbd.2010.04.001openalex-snapshot
The complete mitochondrial genome of the mantid shrimp Oratosquilla oratoria (Crustacea: Malacostraca: Stomatopoda): Novel non-coding regions features and phylogenetic implications of the Stomatopoda
inferredcites →https://doi.org/10.1016/j.gene.2004.01.022openalex-snapshot
Complete mitochondrial DNA sequence of the Australian freshwater crayfish, Cherax destructor (Crustacea: Decapoda: Parastacidae): a novel gene order revealed
inferredcites →https://doi.org/10.1016/j.gene.2007.01.009openalex-snapshot
The complete mitochondrial genome of the Hawaiian anchialine shrimp Halocaridina rubra Holthuis, 1963 (Crustacea: Decapoda: Atyidae)
inferredcites →https://doi.org/10.1016/j.gene.2008.05.020openalex-snapshot
Conservation of structural elements in the mitochondrial control region of Daphnia
inferredcites →https://doi.org/10.1016/j.gene.2021.145624openalex-snapshot
Comparative mitochondrial genomics of sponge-dwelling snapping shrimps in the genus Synalpheus: Exploring differences between eusocial and non-eusocial species and insights into phylogenetic relationships in caridean shrimps
inferredcites →https://doi.org/10.1016/j.ijbiomac.2018.06.056openalex-snapshot
Complete mitochondrial genome of Parasesarma affine (Brachyura: Sesarmidae): Gene rearrangements in Sesarmidae and phylogenetic analysis of the Brachyura
inferredcites →https://doi.org/10.1016/j.ygeno.2018.05.002openalex-snapshot
The complete mitochondrial genome of Parasesarma pictum (Brachyura: Grapsoidea: Sesarmidae) and comparison with other Brachyuran crabs
inferredcites →https://doi.org/10.1016/j.ygeno.2019.08.013openalex-snapshot
Characterization and comparison of the mitochondrial genomes from two Alpheidae species and insights into the phylogeny of Caridea
inferredcites →https://doi.org/10.1016/j.ympev.2012.11.002openalex-snapshot
Mitogenomic analysis of decapod crustacean phylogeny corroborates traditional views on their relationships
inferredcites →https://doi.org/10.1016/j.ympev.2015.02.009openalex-snapshot
MitoPhAST, a new automated mitogenomic phylogeny tool in the post-genomic era with a case study of 89 decapod mitogenomes including eight new freshwater crayfish mitogenomes
inferredcites →https://doi.org/10.1016/j.ympev.2018.05.015openalex-snapshot
ORDER within the chaos: Insights into phylogenetic relationships within the Anomura (Crustacea: Decapoda) from mitochondrial sequences and gene order rearrangements
inferredcites →https://doi.org/10.1016/s0005-2728(98)00161-3openalex-snapshot
The mitochondrial genome: structure, transcription, translation and replication
inferredcites →https://doi.org/10.1016/s0169-5347(01)02182-6openalex-snapshot
Intramitochondrial recombination – is it why some mitochondrial genes sleep around?
inferredcites →https://doi.org/10.1016/s0305-1978(96)00042-7openalex-snapshot
Insect mitochondrial control region: A review of its structure, evolution and usefulness in evolutionary studies
inferredcites →https://doi.org/10.1038/s41598-017-04168-9openalex-snapshot
The highly rearranged mitochondrial genomes of the crabs Maja crispata and Maja squinado (Majidae) and gene order evolution in Brachyura
inferredcites →https://doi.org/10.1038/s41598-018-36132-6openalex-snapshot
The complete mitochondrial genome of the Caribbean spiny lobster Panulirus argus
inferredcites →https://doi.org/10.1038/s41598-019-47145-0openalex-snapshot
Comparative mitogenomics of the Decapoda reveals evolutionary heterogeneity in architecture and composition
inferredcites →https://doi.org/10.1038/s41598-020-64269-wopenalex-snapshot
The complete mitochondrial genome of the eusocial sponge-dwelling snapping shrimp Synalpheus microneptunus
inferredcites →https://doi.org/10.1038/s41598-024-64791-1openalex-snapshot
Complete mitogenome and intra-family comparative mitogenomics showed distinct position of Pama Croaker Otolithoides pama
inferredcites →https://doi.org/10.1038/srep35175openalex-snapshot
A Mitochondrial Genome of Rhyparochromidae (Hemiptera: Heteroptera) and a Comparative Analysis of Related Mitochondrial Genomes
inferredcites →https://doi.org/10.1080/00222939700770111openalex-snapshot
The alpheid shrimp genus Potamalpheops Powell, 1979, (Crustacea: Decapoda: Caridea: Alpheidae) from Southeast Asia, with descriptions of three new species
inferredcites →https://doi.org/10.1080/03946975.2004.10531207openalex-snapshot
On a collection of freshwater shrimps (Crustacea Decapoda Caridea) from the Philippines, with descriptions of five new species
inferredcites →https://doi.org/10.1080/23802359.2018.1545545openalex-snapshot
The complete mitochondrial genome of Alpheus hoplocheles (Decapoda: Alpheidae)
inferredcites →https://doi.org/10.1080/23802359.2019.1704650openalex-snapshot
The complete mitochondrial genome of the symbiotic infaunal snapping shrimp Leptalpheus forceps (Decapoda, Alpheidae)
inferredcites →https://doi.org/10.1093/bioinformatics/btm468openalex-snapshot
CREx: inferring genomic rearrangements based on common intervals
inferredcites →https://doi.org/10.1093/bioinformatics/btv372openalex-snapshot
Forna (force-directed RNA): Simple and effective online RNA secondary structure diagrams
inferredcites →https://doi.org/10.1093/genetics/136.3.927openalex-snapshot
Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.
inferredcites →https://doi.org/10.1093/icb/icy017openalex-snapshot
Mitochondrial Adaptations to Variable Environments and Their Role in Animals’ Stress Tolerance
inferredcites →https://doi.org/10.1093/molbev/msaa297openalex-snapshot
Eusociality Shapes Convergent Patterns of Molecular Evolution across Mitochondrial Genomes of Snapping Shrimps
inferredcites →https://doi.org/10.1093/molbev/msi084openalex-snapshot
Widespread Recombination in Published Animal mtDNA Sequences1
inferredcites →https://doi.org/10.1093/molbev/msy096openalex-snapshot
MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
inferredcites →https://doi.org/10.1093/mollus/eyab018openalex-snapshot
Insight into the adaptive evolution of mitochondrial genomes in intertidal chitons
inferredcites →https://doi.org/10.1093/nar/25.5.955openalex-snapshot
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
inferredcites →https://doi.org/10.1093/nar/27.2.573openalex-snapshot
Tandem repeats finder: a program to analyze DNA sequences
inferredcites →https://doi.org/10.1093/nar/gkg563openalex-snapshot
ExPASy: the proteomics server for in-depth protein knowledge and analysis
inferredcites →https://doi.org/10.1093/nar/gkr1131openalex-snapshot
Improved systematic tRNA gene annotation allows new insights into the evolution of mitochondrial tRNA structures and into the mechanisms of mitochondrial genome rearrangements
inferredcites →https://doi.org/10.1093/nar/gkz238openalex-snapshot
OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025661openalex-snapshot
Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates
inferredcites →https://doi.org/10.1098/rspb.2019.0079openalex-snapshot
A phylogenomic framework, evolutionary timeline and genomic resources for comparative studies of decapod crustaceans
inferredcites →https://doi.org/10.1111/j.0014-3820.2006.tb01886.xopenalex-snapshot
MORPHOLOGICAL PHYLOGENY OF ALPHEID SHRIMPS: PARALLEL PREADAPTATION AND THE ORIGIN OF A KEY MORPHOLOGICAL INNOVATION, THE SNAPPING CLAW
inferredcites →https://doi.org/10.1111/j.1096-3642.2010.00686.xopenalex-snapshot
Two new decapod (Crustacea, Malacostraca) complete mitochondrial genomes: bearings on the phylogenetic relationships within the Decapoda
inferredcites →https://doi.org/10.1186/s12859-017-1793-7openalex-snapshot
A new and updated resource for codon usage tables
inferredcites →https://doi.org/10.15298/arthsel.30.2.05openalex-snapshot
A new species of the genus Potamalpheops (Crustacea: Decapoda: Alpheidae) from the intertidal mangrove swamps of South Vietnam
inferredcites →https://doi.org/10.18353/crustacea.48.0_11openalex-snapshot
A new anchialine cave dwelling species of Potamalpheops Powell, 1979 from the Solomon Islands (Crustacea, Decapoda, Alpheidae)
inferredcites →https://doi.org/10.2307/1548531openalex-snapshot
The "African" Shrimp Genus Potamalpheops in Australia, With the Description of P. Hanleyi, New Species (Decapoda: Alpheidae)
inferredcites →https://doi.org/10.25849/myrmecol.news_012:217openalex-snapshot
Numts and mitochondrial pseudogenes
inferredcites →https://doi.org/10.3389/fgene.2014.00109openalex-snapshot
Losing the stem-loop structure from metazoan mitochondrial tRNAs and co-evolution of interacting factors
inferredcites →https://doi.org/10.5281/zenodo.13229367openalex-snapshot
Alpheid Shrimps From The Mangroves And Mudflats Of Singapore. Part I. Genera Salmoneus, Athanas And Potamalpheops, With The Description Of Two New Species (Crustacea: Decapoda: Caridea)
inferredcites →https://doi.org/10.5962/bhl.part.4100openalex-snapshot
Sur une nouvelle espece d'Alpheopsis, A. haugi, provenant d'un lac d'eau douce du bassin de l'Ogoue (Voyage de M. Haug, 1906)
inferredcites →https://doi.org/10.7717/peerj.2982openalex-snapshot
Digging deeper: new gene order rearrangements and distinct patterns of codons usage in mitochondrial genomes among shrimps from the Axiidea, Gebiidea and Caridea (Crustacea: Decapoda)
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.11646/zootaxa.5555.1.6zenodo-depositor-declared
Potamalpheops yamakawai n. sp., representing the first record of the genus from Japan (Decapoda: Caridea: Alpheidae)
inferred← citeshttps://doi.org/10.1186/s12864-026-12610-4openalex-snapshot
Mitogenomic organization and characteristics of deep-sea pelagic ostracods from both polar regions
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