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Molecular dynamics simulation of Toxin‐Antitoxin (TA) system in Acinetobacter baumannii to explore the novel mechanism for inhibition of cell wall biosynthesis: Zeta Toxin as an effective therapeutic target

https://doi.org/10.1002/jcb.30137
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/1873-3468.13429openalex-snapshot
Identification and functional characterization of a bacterial homologue of Zeta toxin in Leishmania donovani
inferredcites →https://doi.org/10.1002/9781119004813openalex-snapshot
Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria
inferredcites →https://doi.org/10.1002/bmb.2003.494031040239openalex-snapshot
Substrate channeling: Molecular bases
inferredcites →https://doi.org/10.1002/jcc.20084openalex-snapshot
UCSF Chimera—A visualization system for exploratory research and analysis
inferredcites →https://doi.org/10.1002/jcc.21334openalex-snapshot
AutoDock Vina: Improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading
inferredcites →https://doi.org/10.1002/jcc.26141openalex-snapshot
Fast multipole method for three‐dimensional systems with periodic boundary condition in two directions
inferredcites →https://doi.org/10.1006/jmbi.1990.9999openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1007/978-3-642-33253-1_12openalex-snapshot
Type II Toxin-Antitoxin Loci: The Epsilon/zeta Family
inferredcites →https://doi.org/10.1007/bf00228148openalex-snapshot
AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR
inferredcites →https://doi.org/10.1007/bf00355047openalex-snapshot
PRODRG, a program for generating molecular topologies and unique molecular descriptors from coordinates of small molecules
inferredcites →https://doi.org/10.1016/0968-0004(90)90281-fopenalex-snapshot
The P-loop — a common motif in ATP- and GTP-binding proteins
inferredcites →https://doi.org/10.1016/j.micpath.2020.104205openalex-snapshot
Computer aided ligand based screening for identification of promising molecules against enzymes involved in peptidoglycan biosynthetic pathway from Acinetobacter baumannii
inferredcites →https://doi.org/10.1021/acsomega.8b01524openalex-snapshot
Molecular Dynamics Simulations of the Interactions between Glial Cell Line-Derived Neurotrophic Factor Family Receptor GFRα1 and Small-Molecule Ligands
inferredcites →https://doi.org/10.1021/ci500118sopenalex-snapshot
Docking Covalent Inhibitors: A Parameter Free Approach To Pose Prediction and Scoring
inferredcites →https://doi.org/10.1021/ct700200bopenalex-snapshot
P-LINCS: A Parallel Linear Constraint Solver for Molecular Simulation
inferredcites →https://doi.org/10.1021/ja026939xopenalex-snapshot
HADDOCK: A Protein−Protein Docking Approach Based on Biochemical or Biophysical Information
inferredcites →https://doi.org/10.1038/msb.2011.75openalex-snapshot
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega
inferredcites →https://doi.org/10.1038/s41467-018-03652-8openalex-snapshot
The ng_ζ1 toxin of the gonococcal epsilon/zeta toxin/antitoxin system drains precursors for cell wall synthesis
inferredcites →https://doi.org/10.1038/s41598-019-47384-1openalex-snapshot
New insights into the role of plasmids from probiotic Lactobacillus pentosus MP-10 in Aloreña table olive brine fermentation
inferredcites →https://doi.org/10.1073/pnas.0434325100openalex-snapshot
Crystal structure of the plasmid maintenance system ɛ/ζ: Functional mechanism of toxin ζ and inactivation by ɛ 2 ζ 2 complex formation
inferredcites →https://doi.org/10.1074/jbc.m113.519488openalex-snapshot
The ClpXP Protease Is Responsible for the Degradation of the Epsilon Antidote to the Zeta Toxin of the Streptococcal pSM19035 Plasmid
inferredcites →https://doi.org/10.1080/00029157.1976.10403798openalex-snapshot
Rapid In-Office and In-Vivo Desensitization of an Injection Phobia Utilizing Hypnosis
inferredcites →https://doi.org/10.1080/07391102.2018.1427633openalex-snapshot
Identification of anti-filarial leads against aspartate semialdehyde dehydrogenase of Wolbachia endosymbiont of Brugia malayi: combined molecular docking and molecular dynamics approaches
inferredcites →https://doi.org/10.1080/07391102.2019.1696231openalex-snapshot
Identification of peptidomimetic compounds as potential inhibitors against MurA enzyme of Mycobacterium tuberculosis
inferredcites →https://doi.org/10.1080/07391102.2020.1856184openalex-snapshot
Atomistic simulation on flavonoids derivatives as potential inhibitors of bacterial gyrase of Staphylococcus aureus
inferredcites →https://doi.org/10.1093/bioinformatics/btt055openalex-snapshot
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
inferredcites →https://doi.org/10.1093/clinids/22.6.1026openalex-snapshot
Bacteremia Due to Acinetobacter baumannii: Epidemiology, Clinical Findings, and Prognostic Features
inferredcites →https://doi.org/10.1093/nar/gkg512openalex-snapshot
CASTp: Computed Atlas of Surface Topography of proteins
inferredcites →https://doi.org/10.1093/nar/gkh131openalex-snapshot
UniProt: the Universal Protein knowledgebase
inferredcites →https://doi.org/10.1093/nar/gkh468openalex-snapshot
Protein structure prediction and analysis using the Robetta server
inferredcites →https://doi.org/10.1093/nar/gki201openalex-snapshot
Toxin-antitoxin loci are highly abundant in free-living but lost from host-associated prokaryotes
inferredcites →https://doi.org/10.1093/nar/gkq406openalex-snapshot
3DLigandSite: predicting ligand-binding sites using similar structures
inferredcites →https://doi.org/10.1093/nar/gkr356openalex-snapshot
DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins
inferredcites →https://doi.org/10.1093/nar/gkt1223openalex-snapshot
Pfam: the protein families database
inferredcites →https://doi.org/10.1093/nar/gkw306openalex-snapshot
RaptorX-Property: a web server for protein structure property prediction
inferredcites →https://doi.org/10.1093/nar/gky092openalex-snapshot
UniProt: the universal protein knowledgebase
inferredcites →https://doi.org/10.1099/ijsem.0.004311openalex-snapshot
Acinetobacter portensis sp. nov. and Acinetobacter guerrae sp. nov., isolated from raw meat
inferredcites →https://doi.org/10.1099/jmm.0.001233openalex-snapshot
Molecular docking, dynamics and free energy analyses of Acinetobacter baumannii OXA class enzymes with carbapenems investigating their hydrolytic mechanisms
inferredcites →https://doi.org/10.1101/gr.278202openalex-snapshot
CDART: Protein Homology by Domain Architecture
inferredcites →https://doi.org/10.1107/s090744490200985xopenalex-snapshot
PDB Goodies – a web-based GUI to manipulate the Protein Data Bank file
inferredcites →https://doi.org/10.1111/2049-632x.12125openalex-snapshot
Acinetobacter baumannii : evolution of a global pathogen
inferredcites →https://doi.org/10.1128/jb.00237-13openalex-snapshot
Identification and Characterization of Type II Toxin-Antitoxin Systems in the Opportunistic Pathogen Acinetobacter baumannii
inferredcites →https://doi.org/10.1128/jb.00527-07openalex-snapshot
What Is the Benefit to Escherichia coli of Having Multiple Toxin-Antitoxin Systems in Its Genome?
inferredcites →https://doi.org/10.1128/jb.01763-08openalex-snapshot
In Vivo Interactions between Toxin-Antitoxin Proteins Epsilon and Zeta of Streptococcal Plasmid pSM19035 in Saccharomyces cerevisiae
inferredcites →https://doi.org/10.1128/mmbr.00030-12openalex-snapshot
Toxin-Antitoxin Genes of the Gram-Positive Pathogen Streptococcus pneumoniae: So Few and Yet So Many
inferredcites →https://doi.org/10.1186/1471-2180-8-216openalex-snapshot
Acinetobacter baumannii invades epithelial cells and outer membrane protein A mediates interactions with epithelial cells
inferredcites →https://doi.org/10.1186/s13059-015-0701-6openalex-snapshot
A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii
inferredcites →https://doi.org/10.1371/journal.pbio.1001033openalex-snapshot
A Novel Mechanism of Programmed Cell Death in Bacteria by Toxin–Antitoxin Systems Corrupts Peptidoglycan Synthesis
inferredcites →https://doi.org/10.1371/journal.pcbi.1006946openalex-snapshot
TASmania: A bacterial Toxin-Antitoxin Systems database
inferredcites →https://doi.org/10.21775/cimb.016.009openalex-snapshot
Toxin-antitoxin Systems: Classification, Biological Function and Application in Biotechnology
inferredcites →https://doi.org/10.3109/10799893.2016.1155063openalex-snapshot
Pharmacophore modeling and structure-based virtual screening to identify potent inhibitors targeting LuxP ofVibrio harveyi
inferredcites →https://doi.org/10.3389/fcimb.2017.00055openalex-snapshot
Biology of Acinetobacter baumannii: Pathogenesis, Antibiotic Resistance Mechanisms, and Prospective Treatment Options
inferredcites →https://doi.org/10.3389/fmicb.2015.01445openalex-snapshot
Comparative Genomics of Two ST 195 Carbapenem-Resistant Acinetobacter baumannii with Different Susceptibility to Polymyxin Revealed Underlying Resistance Mechanism
inferredcites →https://doi.org/10.3389/fmicb.2020.01895openalex-snapshot
A Primary Physiological Role of Toxin/Antitoxin Systems Is Phage Inhibition
inferredcites →https://doi.org/10.3390/microorganisms8060935openalex-snapshot
Antibiotic Resistance Profiles, Molecular Mechanisms and Innovative Treatment Strategies of Acinetobacter baumannii
inferredcites →https://doi.org/10.3390/toxins11010029openalex-snapshot
Toxin ζ Reduces the ATP and Modulates the Uridine Diphosphate-N-acetylglucosamine Pool
inferredcites →https://doi.org/10.3390/toxins6010304openalex-snapshot
Toxin-Antitoxin Systems as Multilevel Interaction Systems
inferredcites →https://doi.org/10.3390/toxins8050140openalex-snapshot
Toxin-Antitoxin Systems of Staphylococcus aureus
inferredcites →https://doi.org/10.3390/toxins8070227openalex-snapshot
Toxin-Antitoxin Systems in Clinical Pathogens
inferredcites →https://doi.org/10.63485/m0sy4-k3710openalex-snapshot
Nucleic Acids Research Database Issue 2004

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4795085openalex-extracted
Effects of Pepa1 and Pepa2 on Human Red Blood Cell Membrane: A Molecular Dynamics Simulation Study
inferred← citeshttps://doi.org/10.1007/s11274-022-03343-zopenalex-snapshot
A comprehensive review on genomics, systems biology and structural biology approaches for combating antimicrobial resistance in ESKAPE pathogens: computational tools and recent advancements
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Host-pathogen interactions in ESKAPE pathogen infections
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2025.108552openalex-snapshot
Effects of toxin peptides PepA1 and PepA2 on human red blood cell membrane model: A molecular dynamics study
inferred← citeshttps://doi.org/10.1080/07391102.2023.2248271openalex-snapshot
Structural and functional characterization of 6-phosphogluconate dehydrogenase in Plasmodium falciparum (3D7) and identification of its potent inhibitors
inferred← citeshttps://doi.org/10.1111/1462-2920.70207openalex-snapshot
Antibiotic Persister Cells in Acinetobacter baumannii : Overview of Molecular Mechanisms and Removal Strategies
inferred← citeshttps://doi.org/10.1128/spectrum.02518-25openalex-snapshot
RelBE-mediated stress responses reshape cellular morphology of Weissella cibaria under chloramphenicol exposure
inferred← citeshttps://doi.org/10.21203/rs.3.rs-11211246/v1openalex-snapshot
Role of Toxin–Antitoxin (TA) System in Pathogenesis in ESKAPE Pathogens: A Systematic Review
inferred← citeshttps://doi.org/10.21203/rs.3.rs-3556197/v1openalex-snapshot
Identification of potent allosteric inhibitors of PRMT3: pharmacophore based 3D-QSAR modeling and molecular simulations approach
inferred← citeshttps://doi.org/10.3389/fmolb.2022.1055945openalex-snapshot
Gene expression, molecular docking, and molecular dynamics studies to identify potential antifungal compounds targeting virulence proteins/genes VelB and THR as possible drug targets against Curvularia lunata
inferred← citeshttps://doi.org/10.3389/fpls.2024.1325141openalex-snapshot
Metagenomic insights into the response of soil microbial communities to pathogenic Ralstonia solanacearum
inferred← citeshttps://doi.org/10.3390/v15030673openalex-snapshot
Acinetobacter Baumannii Phages: Past, Present and Future
inferred← citeshttps://doi.org/10.70675/09519879z66e7z45f8za98dz37bfbe1a987dopenalex-snapshot
Caractérisatiοn du lipidοme et de la physiοlοgie de cellules persisters à la ciprοflοxacine d'Acinetοbacter baumannii.
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