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A scoring function for docking ligands to low‐resolution protein structures
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/(sici)1096-987x(19971115)18:14<1812::aid-jcc10>3.0.co;2-hopenalex-snapshot
Automated flexible ligand docking method and its application for database search
inferredcites →https://doi.org/10.1002/jcc.10306openalex-snapshot
Detailed analysis of grid‐based molecular docking: A case study of CDOCKER—A CHARMm‐based MD docking algorithm
inferredcites →https://doi.org/10.1002/jcc.1165openalex-snapshot
Docking of small ligands to low‐resolution and theoretically predicted receptor structures
inferredcites →https://doi.org/10.1002/jcc.540100804openalex-snapshot
Validation of the general purpose tripos 5.2 force field
inferredcites →https://doi.org/10.1002/prot.10115openalex-snapshot
Principles of docking: An overview of search algorithms and a guide to scoring functions
inferredcites →https://doi.org/10.1002/prot.10232openalex-snapshot
A new test set for validating predictions of protein–ligand interaction
inferredcites →https://doi.org/10.1006/jmbi.1996.0477openalex-snapshot
A Fast Flexible Docking Method using an Incremental Construction Algorithm
inferredcites →https://doi.org/10.1006/jmbi.1996.0897openalex-snapshot
Development and validation of a genetic algorithm for flexible docking 1 1Edited by F. E. Cohen
inferredcites →https://doi.org/10.1006/jmbi.1998.2401openalex-snapshot
Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation 1 1Edited by J. Thornton
inferredcites →https://doi.org/10.1006/jmbi.2001.4551openalex-snapshot
FlexE: efficient molecular docking considering protein structure variations
inferredcites →https://doi.org/10.1007/bf00124464openalex-snapshot
Placement of medium-sized molecular fragments into active sites of proteins
inferredcites →https://doi.org/10.1016/s0022-2836(02)00698-8openalex-snapshot
De Novo Prediction of Three-dimensional Structures for Major Protein Families
inferredcites →https://doi.org/10.1016/s0969-2126(02)00799-2openalex-snapshot
Structure-Based Discovery of a Novel, Noncovalent Inhibitor of AmpC β-Lactamase
inferredcites →https://doi.org/10.1016/s1093-3263(02)00164-xopenalex-snapshot
LigandFit: a novel method for the shape-directed rapid docking of ligands to protein active sites
inferredcites →https://doi.org/10.1021/jm000467kopenalex-snapshot
Ligand−Protein DataBase: Linking Protein−Ligand Complex Structures to Binding Data
inferredcites →https://doi.org/10.1021/jm020406hopenalex-snapshot
Surflex: Fully Automatic Flexible Molecular Docking Using a Molecular Similarity-Based Search Engine
inferredcites →https://doi.org/10.1021/jm0300173openalex-snapshot
Nuclear Hormone Receptor Targeted Virtual Screening
inferredcites →https://doi.org/10.1021/jm030209yopenalex-snapshot
Lessons in Molecular Recognition: The Effects of Ligand and Protein Flexibility on Molecular Docking Accuracy
inferredcites →https://doi.org/10.1021/jm990408aopenalex-snapshot
Successful Virtual Screening of a Chemical Database for Farnesyltransferase Inhibitor Leads
inferredcites →https://doi.org/10.1023/a:1011115820450openalex-snapshot
DOCK 4.0: Search strategies for automated molecular docking of flexible molecule databases
inferredcites →https://doi.org/10.1073/pnas.0305695101openalex-snapshot
Automated structure prediction of weakly homologous proteins on a genomic scale
inferredcites →https://doi.org/10.1073/pnas.97.3.1008openalex-snapshot
Rational discovery of novel nuclear hormone receptor antagonists
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Assessment of programs for ligand binding affinity prediction
inferred← citeshttps://doi.org/10.1002/jcc.20917openalex-snapshot
Q‐Dock: Low‐resolution flexible ligand docking with pocket‐specific threading restraints
inferred← citeshttps://doi.org/10.1002/jcc.21395openalex-snapshot
Q‐DockLHM: Low‐resolution refinement for ligand comparative modeling
inferred← citeshttps://doi.org/10.1002/jmr.2661openalex-snapshot
Protein surface roughness accounts for binding free energy of Plasmepsin II‐ligand complexes
inferred← citeshttps://doi.org/10.1002/minf.201300143openalex-snapshot
eFindSite: Enhanced Fingerprint‐Based Virtual Screening Against Predicted Ligand Binding Sites in Protein Models
inferred← citeshttps://doi.org/10.1002/prot.22913openalex-snapshot
FINDSITE‐metal: Integrating evolutionary information and machine learning for structure‐based metal‐binding site prediction at the proteome level
inferred← citeshttps://doi.org/10.1007/978-90-481-2368-1_2openalex-snapshot
Complementarity of Hydrophobic/Hydrophilic Properties In Protein—Ligand Complexes: A New Tool to Improve Docking Results
inferred← citeshttps://doi.org/10.1007/s10822-013-9663-5openalex-snapshot
eFindSite: Improved prediction of ligand binding sites in protein models using meta-threading, machine learning and auxiliary ligands
inferred← citeshttps://doi.org/10.1016/b978-0-08-055294-1.00096-9openalex-snapshot
Computational Methods Related to Reaction Chemistry
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3.13 Computational Methods Related to Molecular Structure and Reaction Chemistry of Biomaterials ☆
inferred← citeshttps://doi.org/10.1016/j.foodres.2015.08.022openalex-snapshot
Investigation of the interaction of anthraquinones of Cassia occidentalis seeds with bovine serum albumin by molecular docking and spectroscopic analysis: Correlation to their in vitro cytotoxic potential
inferred← citeshttps://doi.org/10.1016/j.jsb.2010.09.009openalex-snapshot
The utility of geometrical and chemical restraint information extracted from predicted ligand-binding sites in protein structure refinement
inferred← citeshttps://doi.org/10.1021/ci300320topenalex-snapshot
Novel Insights of Structure-Based Modeling for RNA-Targeted Drug Discovery
inferred← citeshttps://doi.org/10.1021/ci400510eopenalex-snapshot
Nonlinear Scoring Functions for Similarity-Based Ligand Docking and Binding Affinity Prediction
inferred← citeshttps://doi.org/10.1021/ci700067fopenalex-snapshot
Docking of ATP to Ca-ATPase: Considering Protein Domain Motions
inferred← citeshttps://doi.org/10.1021/ci7002472openalex-snapshot
Consensus Adaptation of Fields for Molecular Comparison (AFMoC) Models Incorporate Ligand and Receptor Conformational Variability into Tailor-made Scoring Functions
inferred← citeshttps://doi.org/10.1021/ci8000265openalex-snapshot
Homology Model-Based Virtual Screening for GPCR Ligands Using Docking and Target-Biased Scoring
inferred← citeshttps://doi.org/10.1021/ja054195sopenalex-snapshot
A Flexible Docking Procedure for the Exploration of Peptide Binding Selectivity to Known Structures and Homology Models of PDZ Domains
inferred← citeshttps://doi.org/10.1093/bib/bbp017openalex-snapshot
FINDSITE: a combined evolution/structure-based approach to protein function prediction
inferred← citeshttps://doi.org/10.1134/s1068162010040023openalex-snapshot
Molecular docking: The role of noncovalent interactions in the formation of protein-nucleotide and protein-peptide complexes
inferred← citeshttps://doi.org/10.1371/journal.pcbi.0020013openalex-snapshot
Structure Modeling of All Identified G Protein–Coupled Receptors in the Human Genome
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1003829openalex-snapshot
eMatchSite: Sequence Order-Independent Structure Alignments of Ligand Binding Pockets in Protein Models
inferred← citeshttps://doi.org/10.22028/d291-25984openalex-snapshot
Modeling of flexible side chains for protein-ligand docking
inferred← citeshttps://doi.org/10.4236/csta.2020.92003openalex-snapshot
Docking of Glycokinase with Oxo, Sulfo, and Seleno Derivatives of the Carboxamide Activator S41
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