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Comparison of two docking methods for peptide‐protein interactions

https://doi.org/10.1002/jsfa.8880
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/(sici)1097-0134(1997)1+<215::aid-prot29>3.0.co;2-qopenalex-snapshot
Flexible protein–ligand docking by global energy optimization in internal coordinates
inferredcites →https://doi.org/10.1002/prot.10115openalex-snapshot
Principles of docking: An overview of search algorithms and a guide to scoring functions
inferredcites →https://doi.org/10.1002/prot.21735openalex-snapshot
Protein–protein docking in CAPRI using ATTRACT to account for global and local flexibility
inferredcites →https://doi.org/10.1007/978-1-4939-3569-7_3openalex-snapshot
Binding Site Prediction of Proteins with Organic Compounds or Peptides Using GALAXY Web Servers
inferredcites →https://doi.org/10.1016/j.copbio.2008.06.004openalex-snapshot
Peptide-mediated interactions in biological systems: new discoveries and applications
inferredcites →https://doi.org/10.1016/j.jviromet.2011.12.006openalex-snapshot
Development of an immunochromatographic strip for rapid detection of antibodies against classical swine fever virus
inferredcites →https://doi.org/10.1016/j.sbi.2008.01.004openalex-snapshot
Flexible ligand docking to multiple receptor conformations: a practical alternative
inferredcites →https://doi.org/10.1016/j.sbi.2009.07.003openalex-snapshot
Peptides in the treatment of AIDS
inferredcites →https://doi.org/10.1016/j.str.2009.11.012openalex-snapshot
The Structural Basis of Peptide-Protein Binding Strategies
inferredcites →https://doi.org/10.1016/s0959-440x(02)00285-3openalex-snapshot
Prediction of protein–protein interactions by docking methods
inferredcites →https://doi.org/10.1021/ci600186bopenalex-snapshot
Prediction of Multiple Binding Modes of the CDK2 Inhibitors, Anilinopyrazoles, Using the Automated Docking Programs GOLD, FlexX, and LigandFit: An Evaluation of Performance
inferredcites →https://doi.org/10.1021/ci900031yopenalex-snapshot
Carborane Clusters in Computational Drug Design: A Comparative Docking Evaluation Using AutoDock, FlexX, Glide, and Surflex
inferredcites →https://doi.org/10.1021/jm051209wopenalex-snapshot
Similarity Based Virtual Screening: A Tool for Targeted Library Design
inferredcites →https://doi.org/10.1093/bioinformatics/btt038openalex-snapshot
SwarmDock: a server for flexible protein–protein docking
inferredcites →https://doi.org/10.1093/nar/gks398openalex-snapshot
PepSite: prediction of peptide-binding sites from protein surfaces
inferredcites →https://doi.org/10.1093/nar/gkv495openalex-snapshot
GalaxyPepDock: a protein–peptide docking tool based on interaction similarity and energy optimization
inferredcites →https://doi.org/10.1093/nar/gkw329openalex-snapshot
PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex
inferredcites →https://doi.org/10.1098/rsta.2003.1197openalex-snapshot
Organization of cell–regulatory systems through modular–protein–interaction domains
inferredcites →https://doi.org/10.1146/annurev.pharmtox.43.100901.140216openalex-snapshot
Protein Flexibility and Computer-Aided Drug Design
inferredcites →https://doi.org/10.1371/journal.pone.0018934openalex-snapshot
Rosetta FlexPepDock ab-initio: Simultaneous Folding, Docking and Refinement of Peptides onto Their Receptors

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2018.06.005openalex-snapshot
Docking techniques in pharmacology: How much promising?
inferred← citeshttps://doi.org/10.1016/j.compbiomed.2024.108325openalex-snapshot
Deciphering ACE2-RBD binding affinity through peptide scanning: A molecular dynamics simulation approach
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2021.10.135openalex-snapshot
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inferred← citeshttps://doi.org/10.1039/d4fo04478aopenalex-snapshot
Flaxseed-derived peptide, Ile-Pro-Pro-Phe (IPPF), ameliorates hepatic cholesterol metabolism to treat metabolic dysfunction-associated steatotic liver disease by promoting cholesterol conversion and excretion
inferred← citeshttps://doi.org/10.1111/1541-4337.13280openalex-snapshot
Molecular simulation for food protein–ligand interactions: A comprehensive review on principles, current applications, and emerging trends
inferred← citeshttps://doi.org/10.2174/0115680266281358240206112605openalex-snapshot
A New Advanced Approach: Design and Screening of Affinity Peptide Ligands Using Computer Simulation Techniques
inferred← citeshttps://doi.org/10.3389/fmicb.2020.00806openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/foods14050854openalex-snapshot
Establishing Detection Methods for Okadaic Acid Aptamer–Target Interactions: Insights from Computational and Experimental Approaches
inferred← citeshttps://doi.org/10.3390/s23104831openalex-snapshot
Application of the Nicoya OpenSPR to Studies of Biomolecular Binding: A Review of the Literature from 2016 to 2022
inferred← citeshttps://doi.org/10.6002/ect.2022.0409openalex-snapshot
An Operational Burden Issue: Deciding on a Corneal Recipient From the Corneal Transplant Wait List for Elective Corneal Transplant
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Design and preliminary application of affinity peptide based on the structure of the porcine circovirus type II Capsid (PCV2 Cap)
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