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Distinct circular dichroism spectroscopic signatures of polyproline II and unordered secondary structures: Applications in secondary structure analyses

https://doi.org/10.1002/pro.2558
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Effwct of temperature on the circular dichroism spectra of polypeptides in the extended state
inferredcites →https://doi.org/10.1002/bip.1973.360120317openalex-snapshot
Ultraviolet circular dichroism of polyproline and oriented collagen
inferredcites →https://doi.org/10.1002/bip.1975.360140620openalex-snapshot
Ultraviolet circular dichroism of polyproline and oriented collagen
inferredcites →https://doi.org/10.1002/bip.1976.360150308openalex-snapshot
Circular dichroism of collagen, gelatin, and poly(proline) II in the vacuum ultraviolet
inferredcites →https://doi.org/10.1002/bip.20853openalex-snapshot
Protein secondary structure analyses from circular dichroism spectroscopy: Methods and reference databases
inferredcites →https://doi.org/10.1006/abio.1993.1079openalex-snapshot
A Self-Consistent Method for the Analysis of Protein Secondary Structure from Circular Dichroism
inferredcites →https://doi.org/10.1006/abio.2000.4879openalex-snapshot
Estimation of Protein Secondary Structure from Circular Dichroism Spectra: Inclusion of Denatured Proteins with Native Proteins in the Analysis
inferredcites →https://doi.org/10.1007/978-1-4757-2508-7_6openalex-snapshot
Circular Dichroism of Collagen and Related Polypeptides
inferredcites →https://doi.org/10.1016/0003-2697(78)90812-6openalex-snapshot
Circular dichroic analysis of protein conformation: Inclusion of the β-turns
inferredcites →https://doi.org/10.1016/0003-2697(86)90241-1openalex-snapshot
Analysis of protein circular dichroism spectra for secondary structure using a simple matrix multiplication
inferredcites →https://doi.org/10.1016/0003-2697(90)90396-qopenalex-snapshot
Estimation of protein secondary structure and error analysis from circular dichroism spectra
inferredcites →https://doi.org/10.1016/j.ab.2004.06.002openalex-snapshot
CDtool—an integrated software package for circular dichroism spectroscopic data processing, analysis, and archiving
inferredcites →https://doi.org/10.1016/j.bpj.2013.03.063openalex-snapshot
Folding Factors and Partners for the Intrinsically Disordered Protein Micro-Exon Gene 14 (MEG-14)
inferredcites →https://doi.org/10.1016/j.jmb.2013.03.018openalex-snapshot
Polyproline-II Helix in Proteins: Structure and Function
inferredcites →https://doi.org/10.1016/s0021-9258(19)39984-3openalex-snapshot
The secondary structure of gap junctions. Influence of isolation methods and proteolysis.
inferredcites →https://doi.org/10.1017/s003358351000003xopenalex-snapshot
Protein characterisation by synchrotron radiation circular dichroism spectroscopy
inferredcites →https://doi.org/10.1021/bi00199a028openalex-snapshot
Poly(Pro)II Helixes in Globular Proteins: Identification and Circular Dichroic Analysis
inferredcites →https://doi.org/10.1021/bi012159+openalex-snapshot
Intrinsic Disorder and Protein Function
inferredcites →https://doi.org/10.1038/nprot.2006.202openalex-snapshot
Using circular dichroism spectra to estimate protein secondary structure
inferredcites →https://doi.org/10.1039/b316168bopenalex-snapshot
Synchrotron radiation circular dichroism spectroscopy of proteins and applications in structural and functional genomics
inferredcites →https://doi.org/10.1073/pnas.112193999openalex-snapshot
Polyproline II structure in a sequence of seven alanine residues
inferredcites →https://doi.org/10.1074/jbc.m110.130427openalex-snapshot
Structural Basis of Molecular Recognition of the Leishmania Small Hydrophilic Endoplasmic Reticulum-associated Protein (SHERP) at Membrane Surfaces
inferredcites →https://doi.org/10.1093/bioinformatics/btl327openalex-snapshot
A reference database for circular dichroism spectroscopy covering fold and secondary structure space
inferredcites →https://doi.org/10.1093/bioinformatics/btr234openalex-snapshot
A reference dataset for the analyses of membrane protein secondary structures and transmembrane residues using circular dichroism spectroscopy
inferredcites →https://doi.org/10.1093/nar/gkh371openalex-snapshot
DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data
inferredcites →https://doi.org/10.1093/nar/gkq1026openalex-snapshot
PCDDB: the protein circular dichroism data bank, a repository for circular dichroism spectral and metadata
inferredcites →https://doi.org/10.1093/protein/6.4.383openalex-snapshot
Evaluation of secondary structure of proteins from UV circular dichroism spectra using an unsupervised learning neural network
inferredcites →https://doi.org/10.1110/ps.051779806openalex-snapshot
Stereoelectronic effects on polyproline conformation
inferredcites →https://doi.org/10.1110/ps.8.3.587openalex-snapshot
A survey of left‐handed polyproline II helices
inferredcites →https://doi.org/10.1366/0003702055012546openalex-snapshot
Calcium Fluoride Micro Cells for Synchrotron Radiation Circular Dichroism Spectroscopy
inferredcites →https://doi.org/10.1371/journal.pone.0053785openalex-snapshot
Proline: The Distribution, Frequency, Positioning, and Common Functional Roles of Proline and Polyproline Sequences in the Human Proteome
inferredcites →https://doi.org/10.1529/biophysj.106.103515openalex-snapshot
Secondary-Structure Analysis of Denatured Proteins by Vacuum-Ultraviolet Circular Dichroism Spectroscopy

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inferred← citeshttps://doi.org/10.1021/acs.biomac.8b00353openalex-snapshot
Enhancement of Self-Aggregation Properties of Linear Elastin-Derived Short Peptides by Simple Cyclization: Strong Self-Aggregation Properties of Cyclo[FPGVG] n , Consisting Only of Natural Amino Acids
inferred← citeshttps://doi.org/10.1021/acs.biomac.9b00353openalex-snapshot
Supramolecular Modification of a Sequence-Controlled Collagen-Mimicking Polymer
inferred← citeshttps://doi.org/10.1021/acs.chemmater.4c00266openalex-snapshot
Synthetic Antifreeze Glycoproteins with Potent Ice-Binding Activity
inferred← citeshttps://doi.org/10.1021/acs.jafc.2c04379openalex-snapshot
Chemical Characterization of a Collagen-Derived Protein Hydrolysate and Biostimulant Activity Assessment of Its Peptidic Components
inferred← citeshttps://doi.org/10.1021/acs.jafc.6b01911openalex-snapshot
Identification and Evaluation of Cryoprotective Peptides from Chicken Collagen: Ice-Growth Inhibition Activity Compared to That of Type I Antifreeze Proteins in Sucrose Model Systems
inferred← citeshttps://doi.org/10.1021/acs.jctc.1c00408openalex-snapshot
Force Field Effects in Simulations of Flexible Peptides with Varying Polyproline II Propensity
inferred← citeshttps://doi.org/10.1021/acs.jmedchem.3c00406openalex-snapshot
Structure–Activity Relationships of the Antimicrobial Peptide Natural Product Apidaecin
inferred← citeshttps://doi.org/10.1021/acs.joc.3c01175openalex-snapshot
Association between N-Terminal Pyrenes Stabilizes the Collagen Triple Helix
inferred← citeshttps://doi.org/10.1021/acs.joc.3c02840openalex-snapshot
Pseudodiproline (Pro–Cyp) Oligomers Fold into Helical Polyproline Type secondary structures
inferred← citeshttps://doi.org/10.1021/acs.jpcb.5c07284openalex-snapshot
Pyrimidine RNA Homopolymers Promote Amyloid Formation of a Tau Fragment from the Microtubule-Binding Domain
inferred← citeshttps://doi.org/10.1021/acs.jpcb.9b03932openalex-snapshot
Impact of the Conformational Variability of Oligopeptides on the Computational Prediction of Their CD Spectra
inferred← citeshttps://doi.org/10.1021/acs.langmuir.6c03893openalex-snapshot
Comparison of the Ice-Regulating Properties of Side-Zwitterionic Poly(vinyl alcohol)-Poly( l -methionine) and Poly(ethylene glycol)-Poly( l -methionine)
inferred← citeshttps://doi.org/10.1021/acs.nanolett.5c02796openalex-snapshot
Effect of α-Helix Neuropeptide on the Self-Assembly Behavior of β-Sheet Amyloid Short Peptides
inferred← citeshttps://doi.org/10.1021/acs.orglett.0c02914openalex-snapshot
Stabilization of Single Turn Polyproline II Helices via Macrocyclic Hydrocarbon Staples
inferred← citeshttps://doi.org/10.1021/acsabm.5c01567openalex-snapshot
Structural Dynamics of Peptiplexes Formed between Cationic Cell-Penetrating Peptides and DNA: A Comparative Study on TAT-HIV and NLS-SV40T
inferred← citeshttps://doi.org/10.1021/acsabm.8b00491openalex-snapshot
Collagen-ZnO Scaffolds for Wound Healing Applications: Role of Dendrimer Functionalization and Nanoparticle Morphology
inferred← citeshttps://doi.org/10.1021/acsanm.1c03558openalex-snapshot
Keratin-Associated Protein Nanoparticles as Hemostatic Agents
inferred← citeshttps://doi.org/10.1021/acsbiomedchemau.3c00032openalex-snapshot
Intrinsically Disordered Ku Protein-Derived Cell-Penetrating Peptides
inferred← citeshttps://doi.org/10.1021/acschembio.0c00680openalex-snapshot
Synthesis of an Array of Triple-Helical Peptides from Type II Collagen for Multiplex Analysis of Autoantibodies in Rheumatoid Arthritis
inferred← citeshttps://doi.org/10.1021/acsnano.6c06602openalex-snapshot
Correlative Multimodal Framework Reveals Supramolecular Chirality Loss Preceding Fibrillar Rarefaction in Dermal Collagen
inferred← citeshttps://doi.org/10.1021/acsomega.0c05638openalex-snapshot
Heparin Accelerates the Protein Aggregation via the Downhill Polymerization Mechanism: Multi-Spectroscopic Studies to Delineate the Implications on Proteinopathies
inferred← citeshttps://doi.org/10.1021/acsomega.0c06140openalex-snapshot
Simple Regulation of the Self-Assembling Ability by Multimerization of Elastin-Derived Peptide (FPGVG)n Using Nitrilotriacetic Acid as a Building Block
inferred← citeshttps://doi.org/10.1021/acsomega.4c09125openalex-snapshot
Exploring the Potential of PEG-Based Deep Eutectic Solvents as a Sustainable Alternative for Extraction of Biological Macromolecules Bovine Serum Hemoglobin
inferred← citeshttps://doi.org/10.1021/acsomega.4c10806openalex-snapshot
Nicotianin-I: A Tobacco Floral Nectar Peptide with Anticandidal Activity
inferred← citeshttps://doi.org/10.1021/acsomega.5c12783openalex-snapshot
Potato Protein Isolate as a Solubility Enhancer of Poorly Water-Soluble Curcumin
inferred← citeshttps://doi.org/10.1021/acspolymersau.5c00010openalex-snapshot
Influence of Mucoadhesive Polymers on Physicochemical Features and Biocompatibility of Collagen Wafers
inferred← citeshttps://doi.org/10.1021/acssuschemeng.4c00895openalex-snapshot
Eco-Friendly Electrospun Nanofibers Based on Plant Proteins as Tunable and Sustainable Biomaterials
inferred← citeshttps://doi.org/10.1021/acssuschemeng.7b04428openalex-snapshot
Modeling and Analysis of Micellar and Microbubble Dynamics To Derive New Insights in Molecular Interactions Impacting the Packing Behavior of a Green Surfactant for Potential Engineering Implications
inferred← citeshttps://doi.org/10.1021/jacs.3c02285openalex-snapshot
Automated Fast-Flow Synthesis of Chromosome 9 Open Reading Frame 72 Dipeptide Repeat Proteins
inferred← citeshttps://doi.org/10.1021/jacs.3c03659openalex-snapshot
Mirror Image Mucins and Thio Mucins with Tunable Biodegradation
inferred← citeshttps://doi.org/10.1021/jacs.6b10234openalex-snapshot
Macrocyclized Extended Peptides: Inhibiting the Substrate-Recognition Domain of Tankyrase
inferred← citeshttps://doi.org/10.1038/ncomms13482openalex-snapshot
Formation of bacterial pilus-like nanofibres by designed minimalistic self-assembling peptides
inferred← citeshttps://doi.org/10.1038/s41467-018-04570-5openalex-snapshot
Conformation and dynamics of soluble repetitive domain elucidates the initial β-sheet formation of spider silk
inferred← citeshttps://doi.org/10.1038/s41467-026-71205-5openalex-snapshot
Real-time visualization of collagen assembly uncovers metastable properties in hierarchical organization
inferred← citeshttps://doi.org/10.1038/s41598-019-44268-2openalex-snapshot
Characterization of protein extracts from different types of human teeth and insight in biomineralization
inferred← citeshttps://doi.org/10.1038/s41598-020-80164-wopenalex-snapshot
The Aβ(1–38) peptide is a negative regulator of the Aβ(1–42) peptide implicated in Alzheimer disease progression
inferred← citeshttps://doi.org/10.1038/s41598-022-23940-0openalex-snapshot
Development of truncated elastin-like peptide analogues with improved temperature-response and self-assembling properties
inferred← citeshttps://doi.org/10.1038/s41598-026-48875-8openalex-snapshot
Biophysical and aerodynamic properties of a peptide targeting the A-kinase anchoring function of PI3Kγ for pulmonary cAMP modulation
inferred← citeshttps://doi.org/10.1038/s42003-019-0394-6openalex-snapshot
Isolation and mass spectrometry based hydroxyproline mapping of type II collagen derived from Capra hircus ear cartilage
inferred← citeshttps://doi.org/10.1038/s42003-024-06474-1openalex-snapshot
Molecular organization of fibroin heavy chain and mechanism of fibre formation in Bombyx mori
inferred← citeshttps://doi.org/10.1038/s44259-023-00010-7openalex-snapshot
Synergy between Winter Flounder antimicrobial peptides
inferred← citeshttps://doi.org/10.1039/c5ob00180copenalex-snapshot
Synthesis and evaluation of a (3R,6S,9S)-2-oxo-1-azabicyclo[4.3.0]nonane scaffold as a mimic of Xaa-trans-Pro in poly- l -proline type II helix conformation
inferred← citeshttps://doi.org/10.1039/c5tb02035bopenalex-snapshot
Functionalised type-I collagen as a hydrogel building block for bio-orthogonal tissue engineering applications
inferred← citeshttps://doi.org/10.1039/c6cc06423jopenalex-snapshot
Microsecond and nanosecond polyproline II helix formation in aqueous nanodrops measured by mass spectrometry
inferred← citeshttps://doi.org/10.1039/c6sm01714bopenalex-snapshot
Membrane negative curvature induced by a hybrid peptide from pediocin PA-1 and plantaricin 149 as revealed by atomistic molecular dynamics simulations
inferred← citeshttps://doi.org/10.1039/c7cp00306dopenalex-snapshot
Organic photodiodes from homochiral l -proline derived squaraine compounds with strong circular dichroism
inferred← citeshttps://doi.org/10.1039/c7mb00412eopenalex-snapshot
Conformational heterogeneity in tails of DNA-binding proteins is augmented by proline containing repeats
inferred← citeshttps://doi.org/10.1039/c7tb03035eopenalex-snapshot
A hydroxamic acid–methacrylated collagen conjugate for the modulation of inflammation-related MMP upregulation
inferred← citeshttps://doi.org/10.1039/c8sc01948gopenalex-snapshot
Hydrogen evolution from water catalyzed by cobalt-mimochrome VI*a, a synthetic mini-protein
inferred← citeshttps://doi.org/10.1039/c9cy00790copenalex-snapshot
Amyloidogenic model peptides as catalysts for stereoselective aldol reactions
inferred← citeshttps://doi.org/10.1039/c9ob01839eopenalex-snapshot
Optimization of interstrand interactions enables burn detection with a collagen-mimetic peptide
inferred← citeshttps://doi.org/10.1039/c9ob02136aopenalex-snapshot
Peptide precursors that acquire denatured collagen-hybridizing ability by O -to- N acyl migration at physiological pH
inferred← citeshttps://doi.org/10.1039/d0sm00245copenalex-snapshot
Polymorphism of asymmetric catalysts based on amphiphilic lipopeptides in solution
inferred← citeshttps://doi.org/10.1039/d3ob01469jopenalex-snapshot
Harnessing the power of a photoinitiated thiol–ene “click” reaction for the efficient synthesis of S -lipidated collagen model peptide amphiphiles
inferred← citeshttps://doi.org/10.1039/d3sc02202aopenalex-snapshot
Tidying up the conformational ensemble of a disordered peptide by computational prediction of spectroscopic fingerprints
inferred← citeshttps://doi.org/10.1039/d4cc02895copenalex-snapshot
Incorporation of CF 3 -pseudoprolines into polyproline type II foldamers confers promising biophysical features
inferred← citeshttps://doi.org/10.1039/d5cb00111kopenalex-snapshot
Chemoenzymatic synthesis of sialylated and fucosylated mucin analogs reveals glycan-dependent effects on protein conformation and degradation
inferred← citeshttps://doi.org/10.1039/d5sc06441dopenalex-snapshot
Peptide ligand isomerism drives divergent stability and guest binding in Pd 3 L 4 metal-peptidic cages
inferred← citeshttps://doi.org/10.1039/d5tb01841bopenalex-snapshot
Molecular versatility of polyproline II helices: from natural proteins to biomimetic materials
inferred← citeshttps://doi.org/10.1039/d6md00660dopenalex-snapshot
Conformationally restrained de novo peptides to modulate Skp1–Skp2 interaction of the SCF E3 ligase
inferred← citeshttps://doi.org/10.1063/1674-0068/cjcp1811267openalex-snapshot
Sensitive and label-free detection of protein secondary structure by amide III spectral signals using surface-enhanced Raman spectroscopy
inferred← citeshttps://doi.org/10.1080/00268976.2022.2133748openalex-snapshot
Electronic circular dichroism of proteins computed using a diabatisation scheme
inferred← citeshttps://doi.org/10.1093/bib/bbae675openalex-snapshot
Integrating genetic algorithms and language models for enhanced enzyme design
inferred← citeshttps://doi.org/10.1093/nar/gkaf1392openalex-snapshot
Triplex DNA clamp regulates Cas12a activation for ssDNA and RNA sensing
inferred← citeshttps://doi.org/10.1111/cbdd.13706openalex-snapshot
Multimeric TAT peptides are effective in vitro inhibitors of Staphylococcus saprophyticus
inferred← citeshttps://doi.org/10.1111/febs.15109openalex-snapshot
Structural conformation and self‐assembly process of p31‐43 gliadin peptide in aqueous solution. Implications for celiac disease
inferred← citeshttps://doi.org/10.1111/febs.17001openalex-snapshot
A poly‐proline II helix in YadA from Yersinia enterocolitica serotype O:9 facilitates heparin binding through electrostatic interactions
inferred← citeshttps://doi.org/10.1111/febs.70202openalex-snapshot
Biophysical characterization and interaction study of WhiB6 protein of Mycobacterium tuberculosis with espA
inferred← citeshttps://doi.org/10.1111/mpp.13336openalex-snapshot
Plant defensin M t De f 4 ‐derived antifungal peptide with multiple modes of action and potential as a bio‐inspired fungicide
inferred← citeshttps://doi.org/10.1128/aem.01863-22openalex-snapshot
Loosenin-Like Proteins from Phanerochaete carnosa Impact Both Cellulose and Chitin Fiber Networks
inferred← citeshttps://doi.org/10.11606/d.43.2021.tde-05082021-152747openalex-snapshot
Aplicações da espectroscopia de dicroísmo circular e da tensiometria em monocamadas de Langmuir no estudo de proteínas e peptídeos antimicrobianos
inferred← citeshttps://doi.org/10.1186/s40494-021-00519-yopenalex-snapshot
A comparative study on the extraction effects of common agents on collagen-based binders in mural paintings
inferred← citeshttps://doi.org/10.1557/s43579-024-00674-wopenalex-snapshot
Impact of coverage and guest residue on polyproline II helix peptide antifouling
inferred← citeshttps://doi.org/10.18174/465557openalex-snapshot
Unfolding plant desiccation tolerance : evolution, structure, and function of LEA proteins
inferred← citeshttps://doi.org/10.18297/etd/3532openalex-snapshot
Investigating the disorder and compaction of designed Minielastin using nuclear magnetic resonance.
inferred← citeshttps://doi.org/10.21203/rs.3.rs-761375/v1openalex-snapshot
Dendrimer Functionalized Metal Oxide Nanoparticle mediated Self-Assembled Collagen Scaffold for Skin Regenerative Application: Function of Metal in Metal oxides
inferred← citeshttps://doi.org/10.2142/biophysico.16.0_41openalex-snapshot
Synchrotron-radiation vacuum-ultraviolet circular dichroism spectroscopy in structural biology: an overview
inferred← citeshttps://doi.org/10.32657/10356/137620openalex-snapshot
Applications of molecular dynamics simulation in biomolecular folding and recognition
inferred← citeshttps://doi.org/10.3389/fchem.2019.00950openalex-snapshot
Disulfide Crosslinked Hydrogels Made From the Hydra Stinging Cell Protein, Minicollagen-1
inferred← citeshttps://doi.org/10.3389/fnins.2021.636454openalex-snapshot
Rationalizing the Role of Monosodium Glutamate in the Protein Aggregation Through Biophysical Approaches: Potential Impact on Neurodegeneration
inferred← citeshttps://doi.org/10.3389/fphar.2022.918505openalex-snapshot
Active Peptide AR-9 From Eupolyphaga sinensis Reduces Blood Lipid and Hepatic Lipid Accumulation by Restoring Gut Flora and Its Metabolites in a High Fat Diet–Induced Hyperlipidemia Rat
inferred← citeshttps://doi.org/10.3389/fpls.2019.01272openalex-snapshot
Structural Plasticity of Intrinsically Disordered LEA Proteins from Xerophyta schlechteri Provides Protection In Vitro and In Vivo
inferred← citeshttps://doi.org/10.3389/fpls.2021.600623openalex-snapshot
Evaluation of the Potential Use of a Collagen-Based Protein Hydrolysate as a Plant Multi-Stress Protectant
inferred← citeshttps://doi.org/10.3390/biom14091104openalex-snapshot
New BDNF and NT-3 Cyclic Mimetics Concur with Copper to Activate Trophic Signaling Pathways as Potential Molecular Entities to Protect Old Brains from Neurodegeneration
inferred← citeshttps://doi.org/10.3390/cells8111362openalex-snapshot
Phosphorylation of TIP3 Aquaporins during Phaseolus vulgaris Embryo Development
inferred← citeshttps://doi.org/10.3390/foods10050998openalex-snapshot
Investigation by Synchrotron Radiation Circular Dichroism of the Secondary Structure Evolution of Pepsin under Oxidative Environment
inferred← citeshttps://doi.org/10.3390/gels10030167openalex-snapshot
Powdered Cross-Linked Gelatin Methacryloyl as an Injectable Hydrogel for Adipose Tissue Engineering
inferred← citeshttps://doi.org/10.3390/ijms19061685openalex-snapshot
Influence of Bacterial Biofilm Polysaccharide Structure on Interactions with Antimicrobial Peptides: A Study on Klebsiella pneumoniae
inferred← citeshttps://doi.org/10.3390/ijms20030631openalex-snapshot
Interaction of Halictine-Related Antimicrobial Peptides with Membrane Models
inferred← citeshttps://doi.org/10.3390/ijms21155277openalex-snapshot
Biophysical Characterization of Cancer-Related Carbonic Anhydrase IX
inferred← citeshttps://doi.org/10.3390/ijms21207521openalex-snapshot
Targeted Amino Acid Substitutions in a Trichoderma Peptaibol Confer Activity against Fungal Plant Pathogens and Protect Host Tissues from Botrytis cinerea Infection
inferred← citeshttps://doi.org/10.3390/ijms24087489openalex-snapshot
Understanding the Molecular Conformation and Viscoelasticity of Low Sol-Gel Transition Temperature Gelatin Methacryloyl Suspensions
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