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Enzyme classification by ligand binding
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/1097-0282(2002)61:2<127::aid-bip10076>3.0.co;2-nopenalex-snapshot
The binding database: Overview and user's guide
inferredcites →https://doi.org/10.1002/1438-826x(200010)1:3/4<109::aid-gnfd109>3.0.co;2-oopenalex-snapshot
Enzyme data and metabolic information: BRENDA, a resource for research in biology, biochemistry, and medicine
inferredcites →https://doi.org/10.1002/9780470125793.ch9openalex-snapshot
The Molecular Connectivity Chi Indexes and Kappa Shape Indexes in Structure‐Property Modeling
inferredcites →https://doi.org/10.1002/pro.5560061104openalex-snapshot
Tess: A geometric hashing algorithm for deriving 3D coordinate templates for searching structural databases. Application to enzyme active sites
inferredcites →https://doi.org/10.1006/jmbi.2001.4513openalex-snapshot
Evolution of function in protein superfamilies, from a structural perspective 1 1Edited by A. R. Fersht
inferredcites →https://doi.org/10.1016/0144-8617(94)90194-5openalex-snapshot
Enzyme nomenclature — Recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology
inferredcites →https://doi.org/10.1016/1074-5521(95)90283-xopenalex-snapshot
Predicting ligand binding to proteins by affinity fingerprinting
inferredcites →https://doi.org/10.1016/j.jmb.2003.08.057openalex-snapshot
How Well is Enzyme Function Conserved as a Function of Pairwise Sequence Identity?
inferredcites →https://doi.org/10.1016/s0014-5793(02)02342-6openalex-snapshot
Purification and characterisation of the BIOH protein from the biotin biosynthetic pathway
inferredcites →https://doi.org/10.1016/s0022-2836(02)00016-5openalex-snapshot
Enzyme Function Less Conserved than Anticipated
inferredcites →https://doi.org/10.1016/s0022-2836(02)00546-6openalex-snapshot
Evolution of Enzymes in Metabolism: A Network Perspective
inferredcites →https://doi.org/10.1016/s0022-2836(02)00811-2openalex-snapshot
A New Method to Detect Related Function Among Proteins Independent of Sequence and Fold Homology
inferredcites →https://doi.org/10.1016/s0022-2836(02)01408-0openalex-snapshot
Relibase: Design and Development of a Database for Comprehensive Analysis of Protein–Ligand Interactions
inferredcites →https://doi.org/10.1016/s0022-2836(03)00628-4openalex-snapshot
Distinguishing Enzyme Structures from Non-enzymes Without Alignments
inferredcites →https://doi.org/10.1016/s0378-4347(98)00045-0openalex-snapshot
Protein affinity map of chemical space
inferredcites →https://doi.org/10.1016/s0959-440x(03)00074-5openalex-snapshot
Protein informatics towards function identification
inferredcites →https://doi.org/10.1016/s0959-440x(03)00075-7openalex-snapshot
Ligand binding: functional site location, similarity and docking
inferredcites →https://doi.org/10.1016/s0968-0004(01)02027-8openalex-snapshot
BRENDA: a resource for enzyme data and metabolic information
inferredcites →https://doi.org/10.1016/s1074-5521(02)00238-7openalex-snapshot
Small Molecule Affinity Fingerprinting
inferredcites →https://doi.org/10.1016/s1074-5521(99)80013-1openalex-snapshot
Structure-activity relationship homology (SARAH): a conceptual framework for drug discovery in the genomic era
inferredcites →https://doi.org/10.1016/s1093-3263(01)00097-3openalex-snapshot
Issues in representation of molecular structure
inferredcites →https://doi.org/10.1016/s1367-5931(03)00028-0openalex-snapshot
Definitions of enzyme function for the structural genomics era
inferredcites →https://doi.org/10.1021/ci010385kopenalex-snapshot
An Ontology for Pharmaceutical Ligands and Its Application for in Silico Screening and Library Design
inferredcites →https://doi.org/10.1021/ci025569topenalex-snapshot
Similarity Metrics for Ligands Reflecting the Similarity of the Target Proteins
inferredcites →https://doi.org/10.1021/ja0014032openalex-snapshot
Small-Molecule Microarrays: Covalent Attachment and Screening of Alcohol-Containing Small Molecules on Glass Slides
inferredcites →https://doi.org/10.1023/a:1021220208562openalex-snapshot
Future directions in protein function prediction
inferredcites →https://doi.org/10.1023/a:1026127927612openalex-snapshot
From protein structure to biochemical function?
inferredcites →https://doi.org/10.1023/a:1026200610644openalex-snapshot
Structure-based functional inference in structural genomics
inferredcites →https://doi.org/10.1038/nrd791openalex-snapshot
Combinatorial informatics in the post-genomics era
inferredcites →https://doi.org/10.1042/bst0310603openalex-snapshot
Similarity-based approaches to virtual screening
inferredcites →https://doi.org/10.1074/jbc.m303867200openalex-snapshot
Integrating Structure, Bioinformatics, and Enzymology to Discover Function
inferredcites →https://doi.org/10.1093/bioinformatics/18.1.130openalex-snapshot
The Binding Database: data management and interface design
inferredcites →https://doi.org/10.1093/nar/26.1.275openalex-snapshot
GPCRDB: an information system for G protein-coupled receptors
inferredcites →https://doi.org/10.1093/nar/28.1.123openalex-snapshot
WIT: integrated system for high-throughput genome sequence analysis and metabolic reconstruction
inferredcites →https://doi.org/10.1093/nar/29.1.242openalex-snapshot
BIND--The Biomolecular Interaction Network Database
inferredcites →https://doi.org/10.1093/nar/29.1.294openalex-snapshot
LGICdb: the ligand-gated ion channel database
inferredcites →https://doi.org/10.1093/nar/29.1.346openalex-snapshot
Collecting and harvesting biological data: the GPCRDB and NucleaRDB information systems
inferredcites →https://doi.org/10.1093/nar/30.1.402openalex-snapshot
LIGAND: database of chemical compounds and reactions in biological pathways
inferredcites →https://doi.org/10.1093/nar/30.1.47openalex-snapshot
BRENDA, enzyme data and metabolic information
inferredcites →https://doi.org/10.1093/nar/gkg056openalex-snapshot
BIND: the Biomolecular Interaction Network Database
inferredcites →https://doi.org/10.1093/nar/gkh081openalex-snapshot
BRENDA, the enzyme database: updates and major new developments
inferredcites →https://doi.org/10.1093/nar/gkv1178openalex-snapshot
GPCRdb: an information system for G protein-coupled receptors
inferredcites →https://doi.org/10.1093/protein/gzg080openalex-snapshot
Common Structural Cliques: a tool for protein structure and function analysis
inferredcites →https://doi.org/10.1110/ps.0368703openalex-snapshot
Identification of protein biochemical functions by similarity search using the molecular surface database eF‐site
inferredcites →https://doi.org/10.1126/science.1083395openalex-snapshot
From Knowing to Controlling: A Path from Genomics to Drugs Using Small Molecule Probes
inferredcites →https://doi.org/10.1177/108705710100600609openalex-snapshot
High-Density Miniaturized Thermal Shift Assays as a General Strategy for Drug Discovery
inferredcites →https://doi.org/10.2174/1386207013330670openalex-snapshot
BindingDB: A Web-Accessible Molecular Recognition Database
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/9783527673643.ch02openalex-snapshot
In Silico Prediction of Drug Side Effects
inferred← citeshttps://doi.org/10.1002/9783527677122.ch5openalex-snapshot
Supporting Biocatalysis Research with Structural Bioinformatics
inferred← citeshttps://doi.org/10.1002/jcc.21467openalex-snapshot
Prediction of interactiveness between small molecules and enzymes by combining gene ontology and compound similarity
inferred← citeshttps://doi.org/10.1002/prot.24205openalex-snapshot
Predicting enzymatic function from global binding site descriptors
inferred← citeshttps://doi.org/10.1007/978-1-59745-440-7_23openalex-snapshot
Using KEGG in the Transition from Genomics to Chemical Genomics
inferred← citeshttps://doi.org/10.1007/978-1-60761-274-2_8openalex-snapshot
Off-Target Networks Derived from Ligand Set Similarity
inferred← citeshttps://doi.org/10.1007/s00500-010-0624-9openalex-snapshot
A genetic programming method for protein motif discovery and protein classification
inferred← citeshttps://doi.org/10.1016/s1574-1400(08)00002-9openalex-snapshot
Predicting Selectivity and Druggability in Drug Discovery
inferred← citeshttps://doi.org/10.1021/acsomega.3c01621openalex-snapshot
A Computational Pipeline to Identify and Characterize Binding Sites and Interacting Chemotypes in SARS-CoV-2
inferred← citeshttps://doi.org/10.1021/ci8000259openalex-snapshot
Quantifying the Relationships among Drug Classes
inferred← citeshttps://doi.org/10.1021/ci800277fopenalex-snapshot
Investigations of Enzyme-Catalyzed Reactions Based on Physicochemical Descriptors Applied to Hydrolases
inferred← citeshttps://doi.org/10.1021/jm701399fopenalex-snapshot
Chemical Fragments as Foundations for Understanding Target Space and Activity Prediction
inferred← citeshttps://doi.org/10.1038/nbt1284openalex-snapshot
Relating protein pharmacology by ligand chemistry
inferred← citeshttps://doi.org/10.1039/9781849734912-00050openalex-snapshot
Chemoinformatic Approaches to Target Identification
inferred← citeshttps://doi.org/10.1093/bioinformatics/btt105openalex-snapshot
ChemoPy: freely available python package for computational biology and chemoinformatics
inferred← citeshttps://doi.org/10.1093/database/bav087openalex-snapshot
Connecting proteins with drug-like compounds: Open source drug discovery workflows with BindingDB and KNIME
inferred← citeshttps://doi.org/10.1177/1087057106292746openalex-snapshot
Universal Screening Methods and Applications of ThermoFluor®
inferred← citeshttps://doi.org/10.1186/1471-2164-16-s7-s16openalex-snapshot
Application of a hierarchical enzyme classification method reveals the role of gut microbiome in human metabolism
inferred← citeshttps://doi.org/10.1186/s13321-016-0135-5openalex-snapshot
Ligand cluster-based protein network and ePlatton, a multi-target ligand finder
inferred← citeshttps://doi.org/10.1371/journal.pcbi.1000648openalex-snapshot
A Multidimensional Strategy to Detect Polypharmacological Targets in the Absence of Structural and Sequence Homology
inferred← citeshttps://doi.org/10.1504/ijbra.2007.013605openalex-snapshot
Is the protein folding an aim-oriented process? Human haemoglobin as example
inferred← citeshttps://doi.org/10.1517/17460441.2015.1020788openalex-snapshot
Combining label-free cell phenotypic profiling with computational approaches for novel drug discovery
inferred← citeshttps://doi.org/10.1517/17460441.2016.1143460openalex-snapshot
Compound annotation with real time cellular activity profiles to improve drug discovery
inferred← citeshttps://doi.org/10.4172/jpb.1000183openalex-snapshot
Computational Approaches for Automated Classification of Enzyme Sequences
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