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CAPRI rounds 3–5 reveal promising successes and future challenges for RosettaDock

https://doi.org/10.1002/prot.20555

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Effective energy function for proteins in solution

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Cohesin-dockerin recognition in cellulosome assembly: Experiment versus hypothesis

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Bayesian statistical analysis of protein side‐chain rotamer preferences

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Structure of the xylanase from Penicillium simplicissimum

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CAPRI: A Critical Assessment of PRedicted Interactions

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Protein–protein docking predictions for the CAPRI experiment

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A protein–protein docking benchmark

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Automated prediction of CASP-5 structures using the Robetta server

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Rosetta predictions in CASP5: Successes, failures, and prospects for complete automation

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Modeling structurally variable regions in homologous proteins with rosetta

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Progress in protein–protein docking: Atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side‐chain flexibility

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Solution Structure of a Type I Dockerin Domain, a Novel Prokaryotic, Extracellular Calcium-binding Domain11Edited by P. E. Wright

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Epitopic analysis of the Toxoplasma gondii major surface antigen SAG1

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Protein–Protein Docking with Simultaneous Optimization of Rigid-body Displacement and Side-chain Conformations

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Protein Structure Prediction Using Rosetta

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A cohesin domain from Clostridium thermocellum: the crystal structure provides new insights into cellulosome assembly

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Structural Comparison of Two Major endo-1,4-Xylanases from Trichoderma reesei

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Complex between nidogen and laminin fragments reveals a paradigmatic β-propeller interface

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Structural basis of protein phosphatase 1 regulation

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A cytotoxic ribonuclease which specifically cleaves four isoaccepting arginine tRNAs at their anticodon loops

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Cellulosome assembly revealed by the crystal structure of the cohesin–dockerin complex

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Monte Carlo-minimization approach to the multiple-minima problem in protein folding.

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NMR structure of the bovine prion protein

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Native protein sequences are close to optimal for their structures

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Specific Characterization of Substrate and Inhibitor Binding Sites of a Glycosyl Hydrolase Family 11 Xylanase fromAspergillus niger

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Structural Basis for Inhibition of Aspergillus niger Xylanase by Triticum aestivum Xylanase Inhibitor-I

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The Dual Nature of the Wheat Xylanase Protein Inhibitor XIP-I

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Structural and Genetic Analysis of Laminin‐Nidogen Interaction

What points at this work

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Recent Advances inDe NovoProtein Design

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