On the public citation graph
Performance of the first protein docking server ClusPro in CAPRI rounds 3–5
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/1097-0134(20000815)40:3<525::aid-prot190>3.0.co;2-fopenalex-snapshot
Scoring docked conformations generated by rigid-body protein-protein docking
inferredcites →https://doi.org/10.1002/jcc.540040211openalex-snapshot
CHARMM : A program for macromolecular energy, minimization, and dynamics calculations
inferredcites →https://doi.org/10.1002/pro.5560050406openalex-snapshot
Prediction of protein complexes using empirical free energy functions
inferredcites →https://doi.org/10.1002/prot.10115openalex-snapshot
Principles of docking: An overview of search algorithms and a guide to scoring functions
inferredcites →https://doi.org/10.1002/prot.10381openalex-snapshot
CAPRI: A Critical Assessment of PRedicted Interactions
inferredcites →https://doi.org/10.1002/prot.10389openalex-snapshot
ZDOCK: An initial‐stage protein‐docking algorithm
inferredcites →https://doi.org/10.1002/prot.10394openalex-snapshot
Successful discrimination of protein interactions
inferredcites →https://doi.org/10.1002/prot.10397openalex-snapshot
Taking geometry to its edge: Fast unbound rigid (and hinge‐bent) docking
inferredcites →https://doi.org/10.1006/jmbi.1996.0859openalex-snapshot
Determination of atomic desolvation energies from the structures of crystallized proteins
inferredcites →https://doi.org/10.1006/jmbi.1997.1519openalex-snapshot
Rapid refinement of protein interfaces incorporating solvation: application to the docking problem
inferredcites →https://doi.org/10.1016/j.jsb.2005.03.006openalex-snapshot
Predicting oligomeric assemblies: N-mers a primer
inferredcites →https://doi.org/10.1016/j.tibtech.2004.01.006openalex-snapshot
Protein–protein docking: is the glass half-full or half-empty?
inferredcites →https://doi.org/10.1016/s0006-3495(99)77281-4openalex-snapshot
Free Energy Landscapes of Encounter Complexes in Protein-Protein Association
inferredcites →https://doi.org/10.1016/s0959-440x(02)00285-3openalex-snapshot
Prediction of protein–protein interactions by docking methods
inferredcites →https://doi.org/10.1016/s0959-440x(02)00286-5openalex-snapshot
Protein–protein association kinetics and protein docking
inferredcites →https://doi.org/10.1016/s0968-0004(97)01007-4openalex-snapshot
Highways for protein delivery to the mitochondria
inferredcites →https://doi.org/10.1038/375291a0openalex-snapshot
The envelope glycoprotein from tick-borne encephalitis virus at 2 Å resolution
inferredcites →https://doi.org/10.1038/nature01873openalex-snapshot
Complex between nidogen and laminin fragments reveals a paradigmatic β-propeller interface
inferredcites →https://doi.org/10.1038/nature02582openalex-snapshot
Structural basis of protein phosphatase 1 regulation
inferredcites →https://doi.org/10.1038/sj.emboj.7600064openalex-snapshot
Structure of a flavivirus envelope glycoprotein in its low‐pH‐induced membrane fusion conformation
inferredcites →https://doi.org/10.1038/sj.emboj.7600162openalex-snapshot
Structural inhibition of the colicin D tRNase by the tRNA‐mimicking immunity protein
inferredcites →https://doi.org/10.1073/pnas.0400014101openalex-snapshot
Insight into the PrP C → PrP Sc conversion from the structures of antibody-bound ovine prion scrapie-susceptibility variants
inferredcites →https://doi.org/10.1073/pnas.0401942101openalex-snapshot
Anchor residues in protein–protein interactions
inferredcites →https://doi.org/10.1073/pnas.1936124100openalex-snapshot
Cellulosome assembly revealed by the crystal structure of the cohesin–dockerin complex
inferredcites →https://doi.org/10.1073/pnas.89.6.2195openalex-snapshot
Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques.
inferredcites →https://doi.org/10.1074/jbc.m404212200openalex-snapshot
Structural Basis for Inhibition of Aspergillus niger Xylanase by Triticum aestivum Xylanase Inhibitor-I
inferredcites →https://doi.org/10.1074/jbc.m404225200openalex-snapshot
The Dual Nature of the Wheat Xylanase Protein Inhibitor XIP-I
inferredcites →https://doi.org/10.1074/jbc.m414642200openalex-snapshot
Activation of the LicT Transcriptional Antiterminator Involves a Domain Swing/Lock Mechanism Provoking Massive Structural Changes
inferredcites →https://doi.org/10.1093/bioinformatics/btg211openalex-snapshot
Consensus alignment for reliable framework prediction in homology modeling
inferredcites →https://doi.org/10.1093/bioinformatics/btg371openalex-snapshot
ClusPro: an automated docking and discrimination method for the prediction of protein complexes
inferredcites →https://doi.org/10.1145/224170.224218openalex-snapshot
Surveying molecular interactions with DOT
inferredcites →https://doi.org/10.2210/pdb1tlv/pdbopenalex-snapshot
Structure of the native and inactive LicT PRD from B. subtilis
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1002/jcc.21276openalex-snapshot
Protein–protein docking dealing with the unknown
inferred← citeshttps://doi.org/10.1002/prot.20554openalex-snapshot
Classification of protein complexes based on docking difficulty
inferred← citeshttps://doi.org/10.1002/prot.20565openalex-snapshot
Modeling side‐chains using molecular dynamics improve recognition of binding region in CAPRI targets
inferred← citeshttps://doi.org/10.1002/prot.20932openalex-snapshot
Scoring a diverse set of high‐quality docked conformations: A metascore based on electrostatic and desolvation interactions
inferred← citeshttps://doi.org/10.1002/prot.21738openalex-snapshot
A filter enhanced sampling and combinatorial scoring study for protein docking in CAPRI
inferred← citeshttps://doi.org/10.1002/prot.21795openalex-snapshot
ClusPro: Performance in CAPRI rounds 6–11 and the new server
inferred← citeshttps://doi.org/10.1002/prot.22831openalex-snapshot
Protein–protein docking with binding site patch prediction and network‐based terms enhanced combinatorial scoring
inferred← citeshttps://doi.org/10.1002/prot.22962openalex-snapshot
Computational prediction and analysis of the DR6–NAPP interaction
inferred← citeshttps://doi.org/10.1007/s00239-024-10216-6openalex-snapshot
In Silico Investigation of the Interactions Between Cotton Leaf Curl Multan Virus Proteins and the Transcriptional Gene Silencing Factors of Gossypium hirsutum L.
inferred← citeshttps://doi.org/10.1007/s11427-010-4050-0openalex-snapshot
A holistic molecular docking approach for predicting protein-protein complex structure
inferred← citeshttps://doi.org/10.1016/j.bbapap.2006.08.002openalex-snapshot
Predicting 3D structures of transient protein–protein complexes by homology
inferred← citeshttps://doi.org/10.1016/j.bbrc.2007.12.102openalex-snapshot
Molecular modelling of miraculin: Structural analyses and functional hypotheses
inferred← citeshttps://doi.org/10.1016/j.heliyon.2023.e23616openalex-snapshot
Reverse vaccinology and immunoinformatics approach to design a chimeric epitope vaccine against Orientia tsutsugamushi
inferred← citeshttps://doi.org/10.1016/j.insi.2026.100173openalex-snapshot
Design and validation of a chimeric vaccine against Trypanosoma evansi ISG75: An in silico study
inferred← citeshttps://doi.org/10.1016/j.jim.2007.01.007openalex-snapshot
Clonal diversification in OspA-specific antibodies from peripheral circulation of a chronic Lyme arthritis patient
inferred← citeshttps://doi.org/10.1016/j.molimm.2006.06.025openalex-snapshot
Molecular characterization of a disease associated conformational epitope on GAD65 recognised by a human monoclonal antibody b96.11
inferred← citeshttps://doi.org/10.1016/j.str.2007.07.009openalex-snapshot
Study of Recombinant Antibody Fragments and PAI-1 Complexes Combining Protein-Protein Docking and Results from Site-Directed Mutagenesis
inferred← citeshttps://doi.org/10.1021/acs.jcim.5c01029openalex-snapshot
Exploring Protein–Protein Docking Tools: Comprehensive Insights into Traditional and Deep-Learning Approaches
inferred← citeshttps://doi.org/10.1021/acs.jctc.8b00293openalex-snapshot
Protein-RNA Docking Using ICM
inferred← citeshttps://doi.org/10.1038/npre.2010.4545.1openalex-snapshot
Computational Prediction and Analysis of the NAPP - DR6 Interaction: Implications for Alzheimer's Research
inferred← citeshttps://doi.org/10.1039/c005060copenalex-snapshot
Protein–protein docking tested in blind predictions: the CAPRI experiment
inferred← citeshttps://doi.org/10.1074/jbc.m706425200openalex-snapshot
Structural Basis for the Recognition and Cross-linking of Amyloid Fibrils by Human Apolipoprotein E
inferred← citeshttps://doi.org/10.1093/bioinformatics/bti322openalex-snapshot
FastContact: rapid estimate of contact and binding free energies
inferred← citeshttps://doi.org/10.1093/nar/gkm326openalex-snapshot
FastContact: a free energy scoring tool for protein-protein complex structures
inferred← citeshttps://doi.org/10.1093/nar/gkq502openalex-snapshot
ANCHOR: a web server and database for analysis of protein-protein interaction binding pockets for drug discovery
inferred← citeshttps://doi.org/10.1109/bibmw.2009.5332118openalex-snapshot
Computational testing of protein-protein interactions
inferred← citeshttps://doi.org/10.1110/ps.073071808openalex-snapshot
Modeling of protein binary complexes using structural mass spectrometry data
inferred← citeshttps://doi.org/10.1186/1472-6807-10-s1-s4openalex-snapshot
Structural interpretation of protein-protein interaction network
inferred← citeshttps://doi.org/10.1186/1743-422x-5-150openalex-snapshot
Evolutionary and structural analyses of alpha-papillomavirus capsid proteins yields novel insights into L2 structure and interaction with L1
inferred← citeshttps://doi.org/10.1186/1743-422x-7-119openalex-snapshot
Human immunodeficiency virus type 1 Vpr: oligomerization is an essential feature for its incorporation into virus particles
inferred← citeshttps://doi.org/10.1371/journal.pone.0025365openalex-snapshot
Structural Insights into the Mechanism of Protein O-Fucosylation
inferred← citeshttps://doi.org/10.1371/journal.pone.0305413openalex-snapshot
An mRNA vaccine for pancreatic cancer designed by applying in silico immunoinformatics and reverse vaccinology approaches
inferred← citeshttps://doi.org/10.2174/138920308783565741openalex-snapshot
Recent Progress and Future Directions in Protein-Protein Docking
inferred← citeshttps://doi.org/10.31274/etd-180810-4303openalex-snapshot
Building and simulating protein machines
inferred← citeshttps://doi.org/10.55730/1300-011x.3172openalex-snapshot
In-silico analysis for Structural and Functional Characterization of Phosphorus-Starvation Tolerance 1 (PSTOL1) Gene
inferred← citeshttps://doi.org/10.70675/f780f24fzc468z4ab1z8f04z228af1b56a77openalex-snapshot
Comparaison de surface épitopiques en fonction de différentes conditions et calculs d’affinité protéine-protéine par méthodes bio-informatiques
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